Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00237

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00236 and MIT1002_00237 overlap by 1 nucleotidesMIT1002_00237 and MIT1002_00238 are separated by 91 nucleotidesMIT1002_00238 and MIT1002_00239 are separated by 113 nucleotides MIT1002_00236: MIT1002_00236 - Ribosomal RNA small subunit methyltransferase C, at 265,593 to 266,675 _00236 MIT1002_00237: MIT1002_00237 - tRNA (guanine-N(7)-)-methyltransferase, at 266,675 to 267,394 _00237 MIT1002_00238: MIT1002_00238 - acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase, at 267,486 to 268,190 _00238 MIT1002_00239: MIT1002_00239 - A/G-specific adenine glycosylase, at 268,304 to 269,371 _00239 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 265.678 kb on - strandat 265.706 kb on + strand, within MIT1002_00236at 265.709 kb on - strand, within MIT1002_00236at 265.714 kb on - strand, within MIT1002_00236at 265.714 kb on - strand, within MIT1002_00236at 265.765 kb on - strand, within MIT1002_00236at 265.774 kb on + strand, within MIT1002_00236at 265.852 kb on + strand, within MIT1002_00236at 265.852 kb on + strand, within MIT1002_00236at 265.860 kb on - strand, within MIT1002_00236at 265.860 kb on - strand, within MIT1002_00236at 265.860 kb on - strand, within MIT1002_00236at 265.880 kb on + strand, within MIT1002_00236at 265.880 kb on + strand, within MIT1002_00236at 265.890 kb on - strand, within MIT1002_00236at 265.892 kb on + strand, within MIT1002_00236at 265.895 kb on - strand, within MIT1002_00236at 265.895 kb on - strand, within MIT1002_00236at 265.900 kb on - strand, within MIT1002_00236at 265.900 kb on - strand, within MIT1002_00236at 265.900 kb on - strand, within MIT1002_00236at 266.023 kb on - strand, within MIT1002_00236at 266.031 kb on - strand, within MIT1002_00236at 266.115 kb on - strand, within MIT1002_00236at 266.115 kb on - strand, within MIT1002_00236at 266.166 kb on + strand, within MIT1002_00236at 266.202 kb on - strand, within MIT1002_00236at 266.235 kb on + strand, within MIT1002_00236at 266.269 kb on - strand, within MIT1002_00236at 266.410 kb on - strand, within MIT1002_00236at 266.499 kb on + strand, within MIT1002_00236at 266.507 kb on + strand, within MIT1002_00236at 266.515 kb on - strand, within MIT1002_00236at 266.564 kb on + strand, within MIT1002_00236at 266.564 kb on + strand, within MIT1002_00236at 266.564 kb on + strand, within MIT1002_00236at 266.564 kb on + strand, within MIT1002_00236at 266.572 kb on - strandat 266.596 kb on - strandat 266.655 kb on + strandat 266.655 kb on + strandat 266.655 kb on + strandat 266.655 kb on + strandat 266.655 kb on + strandat 266.673 kb on - strandat 266.767 kb on - strand, within MIT1002_00237at 266.793 kb on + strand, within MIT1002_00237at 266.801 kb on - strand, within MIT1002_00237at 266.839 kb on - strand, within MIT1002_00237at 266.841 kb on + strand, within MIT1002_00237at 266.843 kb on + strand, within MIT1002_00237at 266.942 kb on - strand, within MIT1002_00237at 267.053 kb on + strand, within MIT1002_00237at 267.056 kb on + strand, within MIT1002_00237at 267.084 kb on - strand, within MIT1002_00237at 267.097 kb on + strand, within MIT1002_00237at 267.588 kb on - strand, within MIT1002_00238at 267.593 kb on - strand, within MIT1002_00238at 267.646 kb on + strand, within MIT1002_00238at 267.838 kb on + strand, within MIT1002_00238at 267.854 kb on + strand, within MIT1002_00238at 267.908 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.960 kb on - strand, within MIT1002_00238at 267.960 kb on - strand, within MIT1002_00238at 268.095 kb on + strand, within MIT1002_00238at 268.100 kb on + strand, within MIT1002_00238at 268.100 kb on + strand, within MIT1002_00238at 268.105 kb on + strand, within MIT1002_00238at 268.108 kb on - strand, within MIT1002_00238at 268.108 kb on - strand, within MIT1002_00238at 268.164 kb on + strandat 268.181 kb on + strandat 268.181 kb on + strandat 268.181 kb on + strandat 268.181 kb on + strandat 268.189 kb on - strandat 268.315 kb on + strandat 268.337 kb on - strandat 268.345 kb on - strandat 268.375 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
remove
265,678 - -0.2
265,706 + MIT1002_00236 0.10 -1.4
265,709 - MIT1002_00236 0.11 +0.7
265,714 - MIT1002_00236 0.11 +0.2
265,714 - MIT1002_00236 0.11 -0.3
265,765 - MIT1002_00236 0.16 +0.2
265,774 + MIT1002_00236 0.17 -0.9
265,852 + MIT1002_00236 0.24 -1.2
265,852 + MIT1002_00236 0.24 +1.0
265,860 - MIT1002_00236 0.25 +1.7
265,860 - MIT1002_00236 0.25 -1.4
265,860 - MIT1002_00236 0.25 -2.4
265,880 + MIT1002_00236 0.27 +0.5
265,880 + MIT1002_00236 0.27 -1.1
265,890 - MIT1002_00236 0.27 +0.6
265,892 + MIT1002_00236 0.28 +0.5
265,895 - MIT1002_00236 0.28 +0.1
265,895 - MIT1002_00236 0.28 -2.2
265,900 - MIT1002_00236 0.28 -2.7
265,900 - MIT1002_00236 0.28 +1.1
265,900 - MIT1002_00236 0.28 -1.0
266,023 - MIT1002_00236 0.40 -0.2
266,031 - MIT1002_00236 0.40 -1.1
266,115 - MIT1002_00236 0.48 -1.3
266,115 - MIT1002_00236 0.48 -1.2
266,166 + MIT1002_00236 0.53 -0.9
266,202 - MIT1002_00236 0.56 +0.1
266,235 + MIT1002_00236 0.59 -0.1
266,269 - MIT1002_00236 0.62 +0.1
266,410 - MIT1002_00236 0.75 -0.5
266,499 + MIT1002_00236 0.84 +1.7
266,507 + MIT1002_00236 0.84 -0.5
266,515 - MIT1002_00236 0.85 -0.4
266,564 + MIT1002_00236 0.90 +0.1
266,564 + MIT1002_00236 0.90 -0.4
266,564 + MIT1002_00236 0.90 -0.3
266,564 + MIT1002_00236 0.90 +0.1
266,572 - -2.6
266,596 - -0.2
266,655 + +1.3
266,655 + +1.4
266,655 + +0.1
266,655 + +0.8
266,655 + -1.0
266,673 - -0.6
266,767 - MIT1002_00237 0.13 -0.5
266,793 + MIT1002_00237 0.16 +2.5
266,801 - MIT1002_00237 0.17 +1.8
266,839 - MIT1002_00237 0.23 +1.7
266,841 + MIT1002_00237 0.23 +0.5
266,843 + MIT1002_00237 0.23 +0.8
266,942 - MIT1002_00237 0.37 +0.5
267,053 + MIT1002_00237 0.53 -0.4
267,056 + MIT1002_00237 0.53 +1.9
267,084 - MIT1002_00237 0.57 +1.6
267,097 + MIT1002_00237 0.59 +1.9
267,588 - MIT1002_00238 0.14 +0.4
267,593 - MIT1002_00238 0.15 -0.9
267,646 + MIT1002_00238 0.23 -0.7
267,838 + MIT1002_00238 0.50 -0.4
267,854 + MIT1002_00238 0.52 +0.5
267,908 + MIT1002_00238 0.60 -1.5
267,952 + MIT1002_00238 0.66 -0.1
267,952 + MIT1002_00238 0.66 -0.5
267,952 + MIT1002_00238 0.66 +0.6
267,952 + MIT1002_00238 0.66 +0.3
267,952 + MIT1002_00238 0.66 +0.2
267,952 + MIT1002_00238 0.66 +0.0
267,960 - MIT1002_00238 0.67 -1.1
267,960 - MIT1002_00238 0.67 -2.5
268,095 + MIT1002_00238 0.86 +1.6
268,100 + MIT1002_00238 0.87 +0.0
268,100 + MIT1002_00238 0.87 +0.6
268,105 + MIT1002_00238 0.88 +0.2
268,108 - MIT1002_00238 0.88 +0.3
268,108 - MIT1002_00238 0.88 +0.5
268,164 + +0.5
268,181 + -1.3
268,181 + +0.3
268,181 + +3.3
268,181 + -0.2
268,189 - -1.1
268,315 + -1.0
268,337 - -1.1
268,345 - +3.0
268,375 + -0.5

Or see this region's nucleotide sequence