Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00211

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00210 and MIT1002_00211 overlap by 1 nucleotidesMIT1002_00211 and MIT1002_00212 are separated by 27 nucleotidesMIT1002_00212 and MIT1002_00213 are separated by 44 nucleotides MIT1002_00210: MIT1002_00210 - Type II traffic warden ATPase, at 232,913 to 234,625 _00210 MIT1002_00211: MIT1002_00211 - General secretion pathway protein F, at 234,625 to 235,860 _00211 MIT1002_00212: MIT1002_00212 - hypothetical protein, at 235,888 to 236,382 _00212 MIT1002_00213: MIT1002_00213 - Pilin, at 236,427 to 237,014 _00213 Position (kb) 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 233.644 kb on - strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.725 kb on - strand, within MIT1002_00210at 233.735 kb on - strand, within MIT1002_00210at 233.771 kb on - strand, within MIT1002_00210at 233.775 kb on + strand, within MIT1002_00210at 233.783 kb on + strand, within MIT1002_00210at 233.784 kb on + strand, within MIT1002_00210at 233.848 kb on - strand, within MIT1002_00210at 233.859 kb on - strand, within MIT1002_00210at 233.878 kb on + strand, within MIT1002_00210at 233.908 kb on + strand, within MIT1002_00210at 233.911 kb on - strand, within MIT1002_00210at 233.929 kb on + strand, within MIT1002_00210at 233.929 kb on + strand, within MIT1002_00210at 233.947 kb on + strand, within MIT1002_00210at 234.007 kb on - strand, within MIT1002_00210at 234.053 kb on - strand, within MIT1002_00210at 234.058 kb on - strand, within MIT1002_00210at 234.080 kb on - strand, within MIT1002_00210at 234.186 kb on + strand, within MIT1002_00210at 234.186 kb on - strand, within MIT1002_00210at 234.225 kb on - strand, within MIT1002_00210at 234.247 kb on + strand, within MIT1002_00210at 234.256 kb on + strand, within MIT1002_00210at 234.283 kb on - strand, within MIT1002_00210at 234.362 kb on - strand, within MIT1002_00210at 234.387 kb on + strand, within MIT1002_00210at 234.387 kb on + strand, within MIT1002_00210at 234.539 kb on + strandat 234.539 kb on + strandat 234.539 kb on + strandat 234.544 kb on + strandat 234.544 kb on + strandat 234.547 kb on - strandat 234.547 kb on - strandat 234.547 kb on - strandat 234.547 kb on - strandat 234.549 kb on + strandat 234.549 kb on + strandat 234.552 kb on - strandat 234.554 kb on + strandat 234.559 kb on + strandat 234.562 kb on - strandat 234.583 kb on - strandat 234.591 kb on - strandat 234.591 kb on - strandat 234.633 kb on + strandat 234.650 kb on + strandat 234.658 kb on - strandat 234.710 kb on - strandat 234.830 kb on - strand, within MIT1002_00211at 234.861 kb on - strand, within MIT1002_00211at 234.968 kb on + strand, within MIT1002_00211at 234.968 kb on + strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.990 kb on + strand, within MIT1002_00211at 234.998 kb on - strand, within MIT1002_00211at 235.026 kb on - strand, within MIT1002_00211at 235.091 kb on + strand, within MIT1002_00211at 235.152 kb on - strand, within MIT1002_00211at 235.261 kb on + strand, within MIT1002_00211at 235.315 kb on - strand, within MIT1002_00211at 235.427 kb on + strand, within MIT1002_00211at 235.660 kb on + strand, within MIT1002_00211at 235.668 kb on - strand, within MIT1002_00211at 235.708 kb on - strand, within MIT1002_00211at 235.708 kb on - strand, within MIT1002_00211at 235.784 kb on + strandat 235.887 kb on - strandat 235.953 kb on - strand, within MIT1002_00212at 235.993 kb on + strand, within MIT1002_00212at 236.028 kb on + strand, within MIT1002_00212at 236.036 kb on - strand, within MIT1002_00212at 236.054 kb on + strand, within MIT1002_00212at 236.072 kb on - strand, within MIT1002_00212at 236.123 kb on + strand, within MIT1002_00212at 236.133 kb on + strand, within MIT1002_00212at 236.133 kb on + strand, within MIT1002_00212at 236.141 kb on - strand, within MIT1002_00212at 236.205 kb on - strand, within MIT1002_00212at 236.294 kb on + strand, within MIT1002_00212at 236.446 kb on + strandat 236.473 kb on - strandat 236.508 kb on + strand, within MIT1002_00213at 236.518 kb on + strand, within MIT1002_00213at 236.583 kb on + strand, within MIT1002_00213at 236.613 kb on + strand, within MIT1002_00213at 236.613 kb on + strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.629 kb on - strand, within MIT1002_00213at 236.685 kb on + strand, within MIT1002_00213at 236.702 kb on + strand, within MIT1002_00213at 236.706 kb on - strand, within MIT1002_00213at 236.719 kb on + strand, within MIT1002_00213at 236.727 kb on - strand, within MIT1002_00213

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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233,644 - MIT1002_00210 0.43 +0.5
233,703 + MIT1002_00210 0.46 +0.6
233,703 + MIT1002_00210 0.46 +4.0
233,703 + MIT1002_00210 0.46 -1.1
233,703 + MIT1002_00210 0.46 +0.3
233,703 + MIT1002_00210 0.46 +0.3
233,703 + MIT1002_00210 0.46 -0.2
233,703 + MIT1002_00210 0.46 +1.0
233,703 + MIT1002_00210 0.46 +1.2
233,703 + MIT1002_00210 0.46 -1.9
233,703 + MIT1002_00210 0.46 -0.4
233,703 + MIT1002_00210 0.46 +0.4
233,703 + MIT1002_00210 0.46 +0.4
233,703 + MIT1002_00210 0.46 +1.4
233,703 + MIT1002_00210 0.46 +0.5
233,703 + MIT1002_00210 0.46 +0.8
233,703 + MIT1002_00210 0.46 -0.3
233,703 + MIT1002_00210 0.46 +0.9
233,703 + MIT1002_00210 0.46 +1.0
233,703 + MIT1002_00210 0.46 +0.5
233,703 + MIT1002_00210 0.46 +0.0
233,711 - MIT1002_00210 0.47 +1.1
233,711 - MIT1002_00210 0.47 +0.1
233,711 - MIT1002_00210 0.47 +1.5
233,711 - MIT1002_00210 0.47 +2.8
233,711 - MIT1002_00210 0.47 +2.0
233,711 - MIT1002_00210 0.47 -0.3
233,711 - MIT1002_00210 0.47 +0.6
233,711 - MIT1002_00210 0.47 -1.1
233,711 - MIT1002_00210 0.47 +1.2
233,711 - MIT1002_00210 0.47 +0.3
233,711 - MIT1002_00210 0.47 +1.3
233,711 - MIT1002_00210 0.47 +1.5
233,711 - MIT1002_00210 0.47 +2.3
233,711 - MIT1002_00210 0.47 +1.3
233,711 - MIT1002_00210 0.47 +2.1
233,711 - MIT1002_00210 0.47 -0.5
233,711 - MIT1002_00210 0.47 +1.0
233,711 - MIT1002_00210 0.47 +1.4
233,711 - MIT1002_00210 0.47 +1.8
233,711 - MIT1002_00210 0.47 -2.4
233,711 - MIT1002_00210 0.47 +0.3
233,711 - MIT1002_00210 0.47 +0.4
233,711 - MIT1002_00210 0.47 +1.2
233,725 - MIT1002_00210 0.47 +0.6
233,735 - MIT1002_00210 0.48 +3.4
233,771 - MIT1002_00210 0.50 +0.7
233,775 + MIT1002_00210 0.50 +0.3
233,783 + MIT1002_00210 0.51 +1.4
233,784 + MIT1002_00210 0.51 +1.4
233,848 - MIT1002_00210 0.55 +1.9
233,859 - MIT1002_00210 0.55 -0.8
233,878 + MIT1002_00210 0.56 +1.3
233,908 + MIT1002_00210 0.58 +0.3
233,911 - MIT1002_00210 0.58 +0.2
233,929 + MIT1002_00210 0.59 +0.9
233,929 + MIT1002_00210 0.59 -0.0
233,947 + MIT1002_00210 0.60 +1.0
234,007 - MIT1002_00210 0.64 +2.6
234,053 - MIT1002_00210 0.67 -1.2
234,058 - MIT1002_00210 0.67 -0.7
234,080 - MIT1002_00210 0.68 +1.8
234,186 + MIT1002_00210 0.74 +1.3
234,186 - MIT1002_00210 0.74 +0.3
234,225 - MIT1002_00210 0.77 +2.1
234,247 + MIT1002_00210 0.78 +0.7
234,256 + MIT1002_00210 0.78 -1.8
234,283 - MIT1002_00210 0.80 -0.0
234,362 - MIT1002_00210 0.85 +0.7
234,387 + MIT1002_00210 0.86 +2.6
234,387 + MIT1002_00210 0.86 +1.5
234,539 + -1.3
234,539 + +1.6
234,539 + +1.9
234,544 + +0.7
234,544 + +1.2
234,547 - -1.2
234,547 - +0.5
234,547 - +0.8
234,547 - +0.3
234,549 + +3.2
234,549 + +0.1
234,552 - +1.8
234,554 + -1.4
234,559 + +0.9
234,562 - +0.9
234,583 - +0.2
234,591 - +1.5
234,591 - -0.0
234,633 + -0.5
234,650 + +0.6
234,658 - +1.2
234,710 - +0.9
234,830 - MIT1002_00211 0.17 +0.8
234,861 - MIT1002_00211 0.19 -1.0
234,968 + MIT1002_00211 0.28 +0.3
234,968 + MIT1002_00211 0.28 +0.3
234,976 - MIT1002_00211 0.28 +1.3
234,976 - MIT1002_00211 0.28 -0.9
234,976 - MIT1002_00211 0.28 +1.0
234,990 + MIT1002_00211 0.30 +0.9
234,998 - MIT1002_00211 0.30 -1.7
235,026 - MIT1002_00211 0.32 +1.1
235,091 + MIT1002_00211 0.38 +0.3
235,152 - MIT1002_00211 0.43 +1.2
235,261 + MIT1002_00211 0.51 +1.3
235,315 - MIT1002_00211 0.56 -0.2
235,427 + MIT1002_00211 0.65 +1.3
235,660 + MIT1002_00211 0.84 +0.6
235,668 - MIT1002_00211 0.84 +1.9
235,708 - MIT1002_00211 0.88 +0.8
235,708 - MIT1002_00211 0.88 +1.3
235,784 + -0.3
235,887 - +0.9
235,953 - MIT1002_00212 0.13 -1.9
235,993 + MIT1002_00212 0.21 +0.3
236,028 + MIT1002_00212 0.28 -2.8
236,036 - MIT1002_00212 0.30 +0.8
236,054 + MIT1002_00212 0.34 -0.7
236,072 - MIT1002_00212 0.37 +1.1
236,123 + MIT1002_00212 0.47 -1.4
236,133 + MIT1002_00212 0.49 +0.1
236,133 + MIT1002_00212 0.49 -0.2
236,141 - MIT1002_00212 0.51 +0.6
236,205 - MIT1002_00212 0.64 +0.1
236,294 + MIT1002_00212 0.82 -1.5
236,446 + +0.2
236,473 - +0.2
236,508 + MIT1002_00213 0.14 +0.8
236,518 + MIT1002_00213 0.15 +0.3
236,583 + MIT1002_00213 0.27 +0.0
236,613 + MIT1002_00213 0.32 +0.1
236,613 + MIT1002_00213 0.32 +0.0
236,621 - MIT1002_00213 0.33 -0.1
236,621 - MIT1002_00213 0.33 +1.1
236,621 - MIT1002_00213 0.33 +0.6
236,621 - MIT1002_00213 0.33 +1.3
236,629 - MIT1002_00213 0.34 -0.5
236,685 + MIT1002_00213 0.44 -0.5
236,702 + MIT1002_00213 0.47 -0.7
236,706 - MIT1002_00213 0.47 +0.4
236,719 + MIT1002_00213 0.50 +0.3
236,727 - MIT1002_00213 0.51 +0.4

Or see this region's nucleotide sequence