Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00210

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00209 and MIT1002_00210 overlap by 1 nucleotidesMIT1002_00210 and MIT1002_00211 overlap by 1 nucleotides MIT1002_00209: MIT1002_00209 - putative PEP-CTERM system TPR-repeat lipoprotein, at 231,687 to 232,913 _00209 MIT1002_00210: MIT1002_00210 - Type II traffic warden ATPase, at 232,913 to 234,625 _00210 MIT1002_00211: MIT1002_00211 - General secretion pathway protein F, at 234,625 to 235,860 _00211 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 231.992 kb on + strand, within MIT1002_00209at 232.118 kb on - strand, within MIT1002_00209at 232.135 kb on - strand, within MIT1002_00209at 232.156 kb on + strand, within MIT1002_00209at 232.159 kb on - strand, within MIT1002_00209at 232.182 kb on + strand, within MIT1002_00209at 232.182 kb on + strand, within MIT1002_00209at 232.207 kb on - strand, within MIT1002_00209at 232.207 kb on - strand, within MIT1002_00209at 232.213 kb on + strand, within MIT1002_00209at 232.276 kb on - strand, within MIT1002_00209at 232.276 kb on - strand, within MIT1002_00209at 232.276 kb on - strand, within MIT1002_00209at 232.306 kb on - strand, within MIT1002_00209at 232.334 kb on + strand, within MIT1002_00209at 232.339 kb on + strand, within MIT1002_00209at 232.376 kb on - strand, within MIT1002_00209at 232.411 kb on + strand, within MIT1002_00209at 232.508 kb on - strand, within MIT1002_00209at 232.649 kb on - strand, within MIT1002_00209at 232.681 kb on - strand, within MIT1002_00209at 232.683 kb on + strand, within MIT1002_00209at 232.686 kb on - strand, within MIT1002_00209at 232.691 kb on - strand, within MIT1002_00209at 232.753 kb on - strand, within MIT1002_00209at 232.907 kb on + strandat 232.907 kb on + strandat 232.907 kb on + strandat 232.907 kb on + strandat 232.915 kb on - strandat 232.915 kb on - strandat 232.979 kb on + strandat 233.036 kb on - strandat 233.066 kb on - strandat 233.127 kb on + strand, within MIT1002_00210at 233.130 kb on - strand, within MIT1002_00210at 233.133 kb on + strand, within MIT1002_00210at 233.135 kb on - strand, within MIT1002_00210at 233.135 kb on - strand, within MIT1002_00210at 233.221 kb on + strand, within MIT1002_00210at 233.222 kb on + strand, within MIT1002_00210at 233.229 kb on - strand, within MIT1002_00210at 233.229 kb on - strand, within MIT1002_00210at 233.232 kb on + strand, within MIT1002_00210at 233.249 kb on + strand, within MIT1002_00210at 233.250 kb on + strand, within MIT1002_00210at 233.257 kb on - strand, within MIT1002_00210at 233.258 kb on - strand, within MIT1002_00210at 233.258 kb on - strand, within MIT1002_00210at 233.258 kb on - strand, within MIT1002_00210at 233.258 kb on - strand, within MIT1002_00210at 233.339 kb on + strand, within MIT1002_00210at 233.351 kb on + strand, within MIT1002_00210at 233.351 kb on + strand, within MIT1002_00210at 233.351 kb on + strand, within MIT1002_00210at 233.359 kb on - strand, within MIT1002_00210at 233.359 kb on - strand, within MIT1002_00210at 233.384 kb on + strand, within MIT1002_00210at 233.394 kb on + strand, within MIT1002_00210at 233.400 kb on - strand, within MIT1002_00210at 233.402 kb on - strand, within MIT1002_00210at 233.432 kb on - strand, within MIT1002_00210at 233.464 kb on + strand, within MIT1002_00210at 233.489 kb on + strand, within MIT1002_00210at 233.541 kb on + strand, within MIT1002_00210at 233.644 kb on - strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.703 kb on + strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.711 kb on - strand, within MIT1002_00210at 233.725 kb on - strand, within MIT1002_00210at 233.735 kb on - strand, within MIT1002_00210at 233.771 kb on - strand, within MIT1002_00210at 233.775 kb on + strand, within MIT1002_00210at 233.783 kb on + strand, within MIT1002_00210at 233.784 kb on + strand, within MIT1002_00210at 233.848 kb on - strand, within MIT1002_00210at 233.859 kb on - strand, within MIT1002_00210at 233.878 kb on + strand, within MIT1002_00210at 233.908 kb on + strand, within MIT1002_00210at 233.911 kb on - strand, within MIT1002_00210at 233.929 kb on + strand, within MIT1002_00210at 233.929 kb on + strand, within MIT1002_00210at 233.947 kb on + strand, within MIT1002_00210at 234.007 kb on - strand, within MIT1002_00210at 234.053 kb on - strand, within MIT1002_00210at 234.058 kb on - strand, within MIT1002_00210at 234.080 kb on - strand, within MIT1002_00210at 234.186 kb on + strand, within MIT1002_00210at 234.186 kb on - strand, within MIT1002_00210at 234.225 kb on - strand, within MIT1002_00210at 234.247 kb on + strand, within MIT1002_00210at 234.256 kb on + strand, within MIT1002_00210at 234.283 kb on - strand, within MIT1002_00210at 234.362 kb on - strand, within MIT1002_00210at 234.387 kb on + strand, within MIT1002_00210at 234.387 kb on + strand, within MIT1002_00210at 234.539 kb on + strandat 234.539 kb on + strandat 234.539 kb on + strandat 234.544 kb on + strandat 234.544 kb on + strandat 234.547 kb on - strandat 234.547 kb on - strandat 234.547 kb on - strandat 234.547 kb on - strandat 234.549 kb on + strandat 234.549 kb on + strandat 234.552 kb on - strandat 234.554 kb on + strandat 234.559 kb on + strandat 234.562 kb on - strandat 234.583 kb on - strandat 234.591 kb on - strandat 234.591 kb on - strandat 234.633 kb on + strandat 234.650 kb on + strandat 234.658 kb on - strandat 234.710 kb on - strandat 234.830 kb on - strand, within MIT1002_00211at 234.861 kb on - strand, within MIT1002_00211at 234.968 kb on + strand, within MIT1002_00211at 234.968 kb on + strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.990 kb on + strand, within MIT1002_00211at 234.998 kb on - strand, within MIT1002_00211at 235.026 kb on - strand, within MIT1002_00211at 235.091 kb on + strand, within MIT1002_00211at 235.152 kb on - strand, within MIT1002_00211at 235.261 kb on + strand, within MIT1002_00211at 235.315 kb on - strand, within MIT1002_00211at 235.427 kb on + strand, within MIT1002_00211

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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231,992 + MIT1002_00209 0.25 -0.8
232,118 - MIT1002_00209 0.35 +0.7
232,135 - MIT1002_00209 0.37 +0.3
232,156 + MIT1002_00209 0.38 +0.9
232,159 - MIT1002_00209 0.38 +0.2
232,182 + MIT1002_00209 0.40 +0.3
232,182 + MIT1002_00209 0.40 +1.0
232,207 - MIT1002_00209 0.42 -1.3
232,207 - MIT1002_00209 0.42 +1.1
232,213 + MIT1002_00209 0.43 -0.1
232,276 - MIT1002_00209 0.48 -1.3
232,276 - MIT1002_00209 0.48 -1.0
232,276 - MIT1002_00209 0.48 +1.1
232,306 - MIT1002_00209 0.50 +0.1
232,334 + MIT1002_00209 0.53 +0.7
232,339 + MIT1002_00209 0.53 +0.3
232,376 - MIT1002_00209 0.56 +1.5
232,411 + MIT1002_00209 0.59 +0.7
232,508 - MIT1002_00209 0.67 +1.1
232,649 - MIT1002_00209 0.78 -0.5
232,681 - MIT1002_00209 0.81 +1.3
232,683 + MIT1002_00209 0.81 +0.3
232,686 - MIT1002_00209 0.81 -0.1
232,691 - MIT1002_00209 0.82 +1.2
232,753 - MIT1002_00209 0.87 +1.6
232,907 + +0.4
232,907 + +0.5
232,907 + +0.7
232,907 + -0.9
232,915 - +0.7
232,915 - +1.3
232,979 + -0.4
233,036 - +0.1
233,066 - +0.1
233,127 + MIT1002_00210 0.12 -0.3
233,130 - MIT1002_00210 0.13 +1.2
233,133 + MIT1002_00210 0.13 +1.7
233,135 - MIT1002_00210 0.13 +0.6
233,135 - MIT1002_00210 0.13 +1.1
233,221 + MIT1002_00210 0.18 +1.0
233,222 + MIT1002_00210 0.18 +1.0
233,229 - MIT1002_00210 0.18 +2.7
233,229 - MIT1002_00210 0.18 -0.4
233,232 + MIT1002_00210 0.19 +0.7
233,249 + MIT1002_00210 0.20 +1.4
233,250 + MIT1002_00210 0.20 +1.7
233,257 - MIT1002_00210 0.20 +0.9
233,258 - MIT1002_00210 0.20 +1.9
233,258 - MIT1002_00210 0.20 +2.0
233,258 - MIT1002_00210 0.20 +2.4
233,258 - MIT1002_00210 0.20 +2.4
233,339 + MIT1002_00210 0.25 +0.8
233,351 + MIT1002_00210 0.26 +0.6
233,351 + MIT1002_00210 0.26 -1.4
233,351 + MIT1002_00210 0.26 +0.2
233,359 - MIT1002_00210 0.26 -0.6
233,359 - MIT1002_00210 0.26 +1.6
233,384 + MIT1002_00210 0.27 +1.2
233,394 + MIT1002_00210 0.28 +0.5
233,400 - MIT1002_00210 0.28 -0.3
233,402 - MIT1002_00210 0.29 +2.4
233,432 - MIT1002_00210 0.30 +0.5
233,464 + MIT1002_00210 0.32 +0.6
233,489 + MIT1002_00210 0.34 +1.1
233,541 + MIT1002_00210 0.37 +1.2
233,644 - MIT1002_00210 0.43 +0.5
233,703 + MIT1002_00210 0.46 +0.6
233,703 + MIT1002_00210 0.46 +4.0
233,703 + MIT1002_00210 0.46 -1.1
233,703 + MIT1002_00210 0.46 +0.3
233,703 + MIT1002_00210 0.46 +0.3
233,703 + MIT1002_00210 0.46 -0.2
233,703 + MIT1002_00210 0.46 +1.0
233,703 + MIT1002_00210 0.46 +1.2
233,703 + MIT1002_00210 0.46 -1.9
233,703 + MIT1002_00210 0.46 -0.4
233,703 + MIT1002_00210 0.46 +0.4
233,703 + MIT1002_00210 0.46 +0.4
233,703 + MIT1002_00210 0.46 +1.4
233,703 + MIT1002_00210 0.46 +0.5
233,703 + MIT1002_00210 0.46 +0.8
233,703 + MIT1002_00210 0.46 -0.3
233,703 + MIT1002_00210 0.46 +0.9
233,703 + MIT1002_00210 0.46 +1.0
233,703 + MIT1002_00210 0.46 +0.5
233,703 + MIT1002_00210 0.46 +0.0
233,711 - MIT1002_00210 0.47 +1.1
233,711 - MIT1002_00210 0.47 +0.1
233,711 - MIT1002_00210 0.47 +1.5
233,711 - MIT1002_00210 0.47 +2.8
233,711 - MIT1002_00210 0.47 +2.0
233,711 - MIT1002_00210 0.47 -0.3
233,711 - MIT1002_00210 0.47 +0.6
233,711 - MIT1002_00210 0.47 -1.1
233,711 - MIT1002_00210 0.47 +1.2
233,711 - MIT1002_00210 0.47 +0.3
233,711 - MIT1002_00210 0.47 +1.3
233,711 - MIT1002_00210 0.47 +1.5
233,711 - MIT1002_00210 0.47 +2.3
233,711 - MIT1002_00210 0.47 +1.3
233,711 - MIT1002_00210 0.47 +2.1
233,711 - MIT1002_00210 0.47 -0.5
233,711 - MIT1002_00210 0.47 +1.0
233,711 - MIT1002_00210 0.47 +1.4
233,711 - MIT1002_00210 0.47 +1.8
233,711 - MIT1002_00210 0.47 -2.4
233,711 - MIT1002_00210 0.47 +0.3
233,711 - MIT1002_00210 0.47 +0.4
233,711 - MIT1002_00210 0.47 +1.2
233,725 - MIT1002_00210 0.47 +0.6
233,735 - MIT1002_00210 0.48 +3.4
233,771 - MIT1002_00210 0.50 +0.7
233,775 + MIT1002_00210 0.50 +0.3
233,783 + MIT1002_00210 0.51 +1.4
233,784 + MIT1002_00210 0.51 +1.4
233,848 - MIT1002_00210 0.55 +1.9
233,859 - MIT1002_00210 0.55 -0.8
233,878 + MIT1002_00210 0.56 +1.3
233,908 + MIT1002_00210 0.58 +0.3
233,911 - MIT1002_00210 0.58 +0.2
233,929 + MIT1002_00210 0.59 +0.9
233,929 + MIT1002_00210 0.59 -0.0
233,947 + MIT1002_00210 0.60 +1.0
234,007 - MIT1002_00210 0.64 +2.6
234,053 - MIT1002_00210 0.67 -1.2
234,058 - MIT1002_00210 0.67 -0.7
234,080 - MIT1002_00210 0.68 +1.8
234,186 + MIT1002_00210 0.74 +1.3
234,186 - MIT1002_00210 0.74 +0.3
234,225 - MIT1002_00210 0.77 +2.1
234,247 + MIT1002_00210 0.78 +0.7
234,256 + MIT1002_00210 0.78 -1.8
234,283 - MIT1002_00210 0.80 -0.0
234,362 - MIT1002_00210 0.85 +0.7
234,387 + MIT1002_00210 0.86 +2.6
234,387 + MIT1002_00210 0.86 +1.5
234,539 + -1.3
234,539 + +1.6
234,539 + +1.9
234,544 + +0.7
234,544 + +1.2
234,547 - -1.2
234,547 - +0.5
234,547 - +0.8
234,547 - +0.3
234,549 + +3.2
234,549 + +0.1
234,552 - +1.8
234,554 + -1.4
234,559 + +0.9
234,562 - +0.9
234,583 - +0.2
234,591 - +1.5
234,591 - -0.0
234,633 + -0.5
234,650 + +0.6
234,658 - +1.2
234,710 - +0.9
234,830 - MIT1002_00211 0.17 +0.8
234,861 - MIT1002_00211 0.19 -1.0
234,968 + MIT1002_00211 0.28 +0.3
234,968 + MIT1002_00211 0.28 +0.3
234,976 - MIT1002_00211 0.28 +1.3
234,976 - MIT1002_00211 0.28 -0.9
234,976 - MIT1002_00211 0.28 +1.0
234,990 + MIT1002_00211 0.30 +0.9
234,998 - MIT1002_00211 0.30 -1.7
235,026 - MIT1002_00211 0.32 +1.1
235,091 + MIT1002_00211 0.38 +0.3
235,152 - MIT1002_00211 0.43 +1.2
235,261 + MIT1002_00211 0.51 +1.3
235,315 - MIT1002_00211 0.56 -0.2
235,427 + MIT1002_00211 0.65 +1.3

Or see this region's nucleotide sequence