Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00207 and MIT1002_00208 are separated by 2 nucleotides MIT1002_00208 and MIT1002_00209 overlap by 4 nucleotides MIT1002_00209 and MIT1002_00210 overlap by 1 nucleotides
MIT1002_00207: MIT1002_00207 - Pectic enzymes secretion protein OutD, at 229,037 to 230,785
_00207
MIT1002_00208: MIT1002_00208 - putative secretion ATPase, PEP-CTERM locus subfamily, at 230,788 to 231,690
_00208
MIT1002_00209: MIT1002_00209 - putative PEP-CTERM system TPR-repeat lipoprotein, at 231,687 to 232,913
_00209
MIT1002_00210: MIT1002_00210 - Type II traffic warden ATPase, at 232,913 to 234,625
_00210
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 230.695 kb on - strand at 230.704 kb on + strand at 230.755 kb on + strand at 230.755 kb on + strand at 230.866 kb on + strand at 230.904 kb on + strand, within MIT1002_00208 at 230.904 kb on + strand, within MIT1002_00208 at 230.907 kb on - strand, within MIT1002_00208 at 231.020 kb on + strand, within MIT1002_00208 at 231.064 kb on + strand, within MIT1002_00208 at 231.111 kb on - strand, within MIT1002_00208 at 231.121 kb on - strand, within MIT1002_00208 at 231.121 kb on - strand, within MIT1002_00208 at 231.163 kb on + strand, within MIT1002_00208 at 231.269 kb on + strand, within MIT1002_00208 at 231.279 kb on + strand, within MIT1002_00208 at 231.287 kb on - strand, within MIT1002_00208 at 231.287 kb on - strand, within MIT1002_00208 at 231.306 kb on + strand, within MIT1002_00208 at 231.314 kb on - strand, within MIT1002_00208 at 231.404 kb on + strand, within MIT1002_00208 at 231.416 kb on + strand, within MIT1002_00208 at 231.434 kb on + strand, within MIT1002_00208 at 231.449 kb on + strand, within MIT1002_00208 at 231.457 kb on - strand, within MIT1002_00208 at 231.479 kb on - strand, within MIT1002_00208 at 231.521 kb on + strand, within MIT1002_00208 at 231.526 kb on + strand, within MIT1002_00208 at 231.529 kb on - strand, within MIT1002_00208 at 231.529 kb on - strand, within MIT1002_00208 at 231.539 kb on - strand, within MIT1002_00208 at 231.590 kb on - strand, within MIT1002_00208 at 231.610 kb on + strand at 231.613 kb on - strand at 231.706 kb on + strand at 231.706 kb on + strand at 231.760 kb on - strand at 231.787 kb on + strand at 231.787 kb on + strand at 231.787 kb on + strand at 231.787 kb on + strand at 231.795 kb on - strand at 231.795 kb on - strand at 231.795 kb on - strand at 231.864 kb on - strand, within MIT1002_00209 at 231.895 kb on - strand, within MIT1002_00209 at 231.992 kb on + strand, within MIT1002_00209 at 232.118 kb on - strand, within MIT1002_00209 at 232.135 kb on - strand, within MIT1002_00209 at 232.156 kb on + strand, within MIT1002_00209 at 232.159 kb on - strand, within MIT1002_00209 at 232.182 kb on + strand, within MIT1002_00209 at 232.182 kb on + strand, within MIT1002_00209 at 232.207 kb on - strand, within MIT1002_00209 at 232.207 kb on - strand, within MIT1002_00209 at 232.213 kb on + strand, within MIT1002_00209 at 232.276 kb on - strand, within MIT1002_00209 at 232.276 kb on - strand, within MIT1002_00209 at 232.276 kb on - strand, within MIT1002_00209 at 232.306 kb on - strand, within MIT1002_00209 at 232.334 kb on + strand, within MIT1002_00209 at 232.339 kb on + strand, within MIT1002_00209 at 232.376 kb on - strand, within MIT1002_00209 at 232.411 kb on + strand, within MIT1002_00209 at 232.508 kb on - strand, within MIT1002_00209 at 232.649 kb on - strand, within MIT1002_00209 at 232.681 kb on - strand, within MIT1002_00209 at 232.683 kb on + strand, within MIT1002_00209 at 232.686 kb on - strand, within MIT1002_00209 at 232.691 kb on - strand, within MIT1002_00209 at 232.753 kb on - strand, within MIT1002_00209 at 232.907 kb on + strand at 232.907 kb on + strand at 232.907 kb on + strand at 232.907 kb on + strand at 232.915 kb on - strand at 232.915 kb on - strand at 232.979 kb on + strand at 233.036 kb on - strand at 233.066 kb on - strand at 233.127 kb on + strand, within MIT1002_00210 at 233.130 kb on - strand, within MIT1002_00210 at 233.133 kb on + strand, within MIT1002_00210 at 233.135 kb on - strand, within MIT1002_00210 at 233.135 kb on - strand, within MIT1002_00210 at 233.221 kb on + strand, within MIT1002_00210 at 233.222 kb on + strand, within MIT1002_00210 at 233.229 kb on - strand, within MIT1002_00210 at 233.229 kb on - strand, within MIT1002_00210 at 233.232 kb on + strand, within MIT1002_00210 at 233.249 kb on + strand, within MIT1002_00210 at 233.250 kb on + strand, within MIT1002_00210 at 233.257 kb on - strand, within MIT1002_00210 at 233.258 kb on - strand, within MIT1002_00210 at 233.258 kb on - strand, within MIT1002_00210 at 233.258 kb on - strand, within MIT1002_00210 at 233.258 kb on - strand, within MIT1002_00210 at 233.339 kb on + strand, within MIT1002_00210 at 233.351 kb on + strand, within MIT1002_00210 at 233.351 kb on + strand, within MIT1002_00210 at 233.351 kb on + strand, within MIT1002_00210 at 233.359 kb on - strand, within MIT1002_00210 at 233.359 kb on - strand, within MIT1002_00210 at 233.384 kb on + strand, within MIT1002_00210 at 233.394 kb on + strand, within MIT1002_00210 at 233.400 kb on - strand, within MIT1002_00210 at 233.402 kb on - strand, within MIT1002_00210 at 233.432 kb on - strand, within MIT1002_00210 at 233.464 kb on + strand, within MIT1002_00210 at 233.489 kb on + strand, within MIT1002_00210 at 233.541 kb on + strand, within MIT1002_00210 at 233.644 kb on - strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.725 kb on - strand, within MIT1002_00210 at 233.735 kb on - strand, within MIT1002_00210 at 233.771 kb on - strand, within MIT1002_00210 at 233.775 kb on + strand, within MIT1002_00210 at 233.783 kb on + strand, within MIT1002_00210 at 233.784 kb on + strand, within MIT1002_00210 at 233.848 kb on - strand, within MIT1002_00210 at 233.859 kb on - strand, within MIT1002_00210 at 233.878 kb on + strand, within MIT1002_00210 at 233.908 kb on + strand, within MIT1002_00210 at 233.911 kb on - strand, within MIT1002_00210
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 230,695 - -0.8 230,704 + +0.4 230,755 + -0.7 230,755 + +0.5 230,866 + +2.1 230,904 + MIT1002_00208 0.13 +0.6 230,904 + MIT1002_00208 0.13 -0.3 230,907 - MIT1002_00208 0.13 +1.7 231,020 + MIT1002_00208 0.26 +1.0 231,064 + MIT1002_00208 0.31 +1.2 231,111 - MIT1002_00208 0.36 +0.2 231,121 - MIT1002_00208 0.37 +1.6 231,121 - MIT1002_00208 0.37 +0.3 231,163 + MIT1002_00208 0.42 +0.5 231,269 + MIT1002_00208 0.53 +0.6 231,279 + MIT1002_00208 0.54 +0.4 231,287 - MIT1002_00208 0.55 -0.2 231,287 - MIT1002_00208 0.55 +0.7 231,306 + MIT1002_00208 0.57 +1.2 231,314 - MIT1002_00208 0.58 +0.2 231,404 + MIT1002_00208 0.68 +0.9 231,416 + MIT1002_00208 0.70 +0.6 231,434 + MIT1002_00208 0.72 +0.4 231,449 + MIT1002_00208 0.73 +1.1 231,457 - MIT1002_00208 0.74 -0.0 231,479 - MIT1002_00208 0.77 +1.0 231,521 + MIT1002_00208 0.81 +0.9 231,526 + MIT1002_00208 0.82 -1.1 231,529 - MIT1002_00208 0.82 +0.4 231,529 - MIT1002_00208 0.82 +1.6 231,539 - MIT1002_00208 0.83 +1.8 231,590 - MIT1002_00208 0.89 -0.2 231,610 + +0.2 231,613 - -0.8 231,706 + +0.5 231,706 + -1.1 231,760 - -2.0 231,787 + +2.4 231,787 + +0.5 231,787 + +0.3 231,787 + -0.7 231,795 - -1.7 231,795 - -0.2 231,795 - +3.2 231,864 - MIT1002_00209 0.14 +1.2 231,895 - MIT1002_00209 0.17 +0.5 231,992 + MIT1002_00209 0.25 -0.8 232,118 - MIT1002_00209 0.35 +0.7 232,135 - MIT1002_00209 0.37 +0.3 232,156 + MIT1002_00209 0.38 +0.9 232,159 - MIT1002_00209 0.38 +0.2 232,182 + MIT1002_00209 0.40 +0.3 232,182 + MIT1002_00209 0.40 +1.0 232,207 - MIT1002_00209 0.42 -1.3 232,207 - MIT1002_00209 0.42 +1.1 232,213 + MIT1002_00209 0.43 -0.1 232,276 - MIT1002_00209 0.48 -1.3 232,276 - MIT1002_00209 0.48 -1.0 232,276 - MIT1002_00209 0.48 +1.1 232,306 - MIT1002_00209 0.50 +0.1 232,334 + MIT1002_00209 0.53 +0.7 232,339 + MIT1002_00209 0.53 +0.3 232,376 - MIT1002_00209 0.56 +1.5 232,411 + MIT1002_00209 0.59 +0.7 232,508 - MIT1002_00209 0.67 +1.1 232,649 - MIT1002_00209 0.78 -0.5 232,681 - MIT1002_00209 0.81 +1.3 232,683 + MIT1002_00209 0.81 +0.3 232,686 - MIT1002_00209 0.81 -0.1 232,691 - MIT1002_00209 0.82 +1.2 232,753 - MIT1002_00209 0.87 +1.6 232,907 + +0.4 232,907 + +0.5 232,907 + +0.7 232,907 + -0.9 232,915 - +0.7 232,915 - +1.3 232,979 + -0.4 233,036 - +0.1 233,066 - +0.1 233,127 + MIT1002_00210 0.12 -0.3 233,130 - MIT1002_00210 0.13 +1.2 233,133 + MIT1002_00210 0.13 +1.7 233,135 - MIT1002_00210 0.13 +0.6 233,135 - MIT1002_00210 0.13 +1.1 233,221 + MIT1002_00210 0.18 +1.0 233,222 + MIT1002_00210 0.18 +1.0 233,229 - MIT1002_00210 0.18 +2.7 233,229 - MIT1002_00210 0.18 -0.4 233,232 + MIT1002_00210 0.19 +0.7 233,249 + MIT1002_00210 0.20 +1.4 233,250 + MIT1002_00210 0.20 +1.7 233,257 - MIT1002_00210 0.20 +0.9 233,258 - MIT1002_00210 0.20 +1.9 233,258 - MIT1002_00210 0.20 +2.0 233,258 - MIT1002_00210 0.20 +2.4 233,258 - MIT1002_00210 0.20 +2.4 233,339 + MIT1002_00210 0.25 +0.8 233,351 + MIT1002_00210 0.26 +0.6 233,351 + MIT1002_00210 0.26 -1.4 233,351 + MIT1002_00210 0.26 +0.2 233,359 - MIT1002_00210 0.26 -0.6 233,359 - MIT1002_00210 0.26 +1.6 233,384 + MIT1002_00210 0.27 +1.2 233,394 + MIT1002_00210 0.28 +0.5 233,400 - MIT1002_00210 0.28 -0.3 233,402 - MIT1002_00210 0.29 +2.4 233,432 - MIT1002_00210 0.30 +0.5 233,464 + MIT1002_00210 0.32 +0.6 233,489 + MIT1002_00210 0.34 +1.1 233,541 + MIT1002_00210 0.37 +1.2 233,644 - MIT1002_00210 0.43 +0.5 233,703 + MIT1002_00210 0.46 +0.6 233,703 + MIT1002_00210 0.46 +4.0 233,703 + MIT1002_00210 0.46 -1.1 233,703 + MIT1002_00210 0.46 +0.3 233,703 + MIT1002_00210 0.46 +0.3 233,703 + MIT1002_00210 0.46 -0.2 233,703 + MIT1002_00210 0.46 +1.0 233,703 + MIT1002_00210 0.46 +1.2 233,703 + MIT1002_00210 0.46 -1.9 233,703 + MIT1002_00210 0.46 -0.4 233,703 + MIT1002_00210 0.46 +0.4 233,703 + MIT1002_00210 0.46 +0.4 233,703 + MIT1002_00210 0.46 +1.4 233,703 + MIT1002_00210 0.46 +0.5 233,703 + MIT1002_00210 0.46 +0.8 233,703 + MIT1002_00210 0.46 -0.3 233,703 + MIT1002_00210 0.46 +0.9 233,703 + MIT1002_00210 0.46 +1.0 233,703 + MIT1002_00210 0.46 +0.5 233,703 + MIT1002_00210 0.46 +0.0 233,711 - MIT1002_00210 0.47 +1.1 233,711 - MIT1002_00210 0.47 +0.1 233,711 - MIT1002_00210 0.47 +1.5 233,711 - MIT1002_00210 0.47 +2.8 233,711 - MIT1002_00210 0.47 +2.0 233,711 - MIT1002_00210 0.47 -0.3 233,711 - MIT1002_00210 0.47 +0.6 233,711 - MIT1002_00210 0.47 -1.1 233,711 - MIT1002_00210 0.47 +1.2 233,711 - MIT1002_00210 0.47 +0.3 233,711 - MIT1002_00210 0.47 +1.3 233,711 - MIT1002_00210 0.47 +1.5 233,711 - MIT1002_00210 0.47 +2.3 233,711 - MIT1002_00210 0.47 +1.3 233,711 - MIT1002_00210 0.47 +2.1 233,711 - MIT1002_00210 0.47 -0.5 233,711 - MIT1002_00210 0.47 +1.0 233,711 - MIT1002_00210 0.47 +1.4 233,711 - MIT1002_00210 0.47 +1.8 233,711 - MIT1002_00210 0.47 -2.4 233,711 - MIT1002_00210 0.47 +0.3 233,711 - MIT1002_00210 0.47 +0.4 233,711 - MIT1002_00210 0.47 +1.2 233,725 - MIT1002_00210 0.47 +0.6 233,735 - MIT1002_00210 0.48 +3.4 233,771 - MIT1002_00210 0.50 +0.7 233,775 + MIT1002_00210 0.50 +0.3 233,783 + MIT1002_00210 0.51 +1.4 233,784 + MIT1002_00210 0.51 +1.4 233,848 - MIT1002_00210 0.55 +1.9 233,859 - MIT1002_00210 0.55 -0.8 233,878 + MIT1002_00210 0.56 +1.3 233,908 + MIT1002_00210 0.58 +0.3 233,911 - MIT1002_00210 0.58 +0.2
Or see this region's nucleotide sequence