Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00207

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00204 and MIT1002_00205 overlap by 26 nucleotidesMIT1002_00205 and MIT1002_00206 are separated by 9 nucleotidesMIT1002_00206 and MIT1002_00207 overlap by 17 nucleotidesMIT1002_00207 and MIT1002_00208 are separated by 2 nucleotidesMIT1002_00208 and MIT1002_00209 overlap by 4 nucleotides MIT1002_00204: MIT1002_00204 - Fimbrial assembly protein (PilN), at 227,475 to 228,101 _00204 MIT1002_00205: MIT1002_00205 - General secretion pathway, M protein, at 228,076 to 228,723 _00205 MIT1002_00206: MIT1002_00206 - hypothetical protein, at 228,733 to 229,053 _00206 MIT1002_00207: MIT1002_00207 - Pectic enzymes secretion protein OutD, at 229,037 to 230,785 _00207 MIT1002_00208: MIT1002_00208 - putative secretion ATPase, PEP-CTERM locus subfamily, at 230,788 to 231,690 _00208 MIT1002_00209: MIT1002_00209 - putative PEP-CTERM system TPR-repeat lipoprotein, at 231,687 to 232,913 _00209 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.115 kb on + strandat 228.115 kb on + strandat 228.123 kb on - strandat 228.123 kb on - strandat 228.160 kb on - strand, within MIT1002_00205at 228.160 kb on - strand, within MIT1002_00205at 228.324 kb on + strand, within MIT1002_00205at 228.331 kb on - strand, within MIT1002_00205at 228.339 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.431 kb on - strand, within MIT1002_00205at 228.521 kb on - strand, within MIT1002_00205at 228.569 kb on + strand, within MIT1002_00205at 228.587 kb on + strand, within MIT1002_00205at 228.597 kb on + strand, within MIT1002_00205at 228.605 kb on - strand, within MIT1002_00205at 228.605 kb on - strand, within MIT1002_00205at 228.631 kb on + strand, within MIT1002_00205at 228.673 kb on + strandat 228.673 kb on + strandat 228.673 kb on + strandat 228.673 kb on + strandat 228.681 kb on - strandat 228.688 kb on - strandat 228.720 kb on + strandat 228.741 kb on - strandat 228.845 kb on - strand, within MIT1002_00206at 228.901 kb on + strand, within MIT1002_00206at 228.904 kb on - strand, within MIT1002_00206at 228.955 kb on + strand, within MIT1002_00206at 229.072 kb on + strandat 229.136 kb on - strandat 229.176 kb on - strandat 229.176 kb on - strandat 229.197 kb on + strandat 229.198 kb on - strandat 229.227 kb on - strand, within MIT1002_00207at 229.244 kb on + strand, within MIT1002_00207at 229.251 kb on - strand, within MIT1002_00207at 229.251 kb on - strand, within MIT1002_00207at 229.251 kb on - strand, within MIT1002_00207at 229.293 kb on + strand, within MIT1002_00207at 229.293 kb on + strand, within MIT1002_00207at 229.301 kb on - strand, within MIT1002_00207at 229.336 kb on + strand, within MIT1002_00207at 229.337 kb on + strand, within MIT1002_00207at 229.337 kb on + strand, within MIT1002_00207at 229.344 kb on - strand, within MIT1002_00207at 229.344 kb on - strand, within MIT1002_00207at 229.352 kb on - strand, within MIT1002_00207at 229.380 kb on + strand, within MIT1002_00207at 229.420 kb on - strand, within MIT1002_00207at 229.474 kb on + strand, within MIT1002_00207at 229.474 kb on + strand, within MIT1002_00207at 229.482 kb on - strand, within MIT1002_00207at 229.515 kb on + strand, within MIT1002_00207at 229.551 kb on - strand, within MIT1002_00207at 229.610 kb on + strand, within MIT1002_00207at 229.678 kb on - strand, within MIT1002_00207at 229.775 kb on + strand, within MIT1002_00207at 229.775 kb on - strand, within MIT1002_00207at 229.785 kb on + strand, within MIT1002_00207at 229.793 kb on - strand, within MIT1002_00207at 229.797 kb on + strand, within MIT1002_00207at 229.819 kb on - strand, within MIT1002_00207at 229.826 kb on + strand, within MIT1002_00207at 229.834 kb on - strand, within MIT1002_00207at 229.834 kb on - strand, within MIT1002_00207at 229.898 kb on + strand, within MIT1002_00207at 229.920 kb on - strand, within MIT1002_00207at 229.932 kb on + strand, within MIT1002_00207at 229.932 kb on + strand, within MIT1002_00207at 229.932 kb on + strand, within MIT1002_00207at 230.013 kb on + strand, within MIT1002_00207at 230.118 kb on + strand, within MIT1002_00207at 230.204 kb on + strand, within MIT1002_00207at 230.221 kb on + strand, within MIT1002_00207at 230.221 kb on + strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.257 kb on + strand, within MIT1002_00207at 230.304 kb on + strand, within MIT1002_00207at 230.380 kb on + strand, within MIT1002_00207at 230.422 kb on - strand, within MIT1002_00207at 230.456 kb on - strand, within MIT1002_00207at 230.510 kb on + strand, within MIT1002_00207at 230.674 kb on + strandat 230.679 kb on + strandat 230.682 kb on - strandat 230.682 kb on - strandat 230.695 kb on - strandat 230.704 kb on + strandat 230.755 kb on + strandat 230.755 kb on + strandat 230.866 kb on + strandat 230.904 kb on + strand, within MIT1002_00208at 230.904 kb on + strand, within MIT1002_00208at 230.907 kb on - strand, within MIT1002_00208at 231.020 kb on + strand, within MIT1002_00208at 231.064 kb on + strand, within MIT1002_00208at 231.111 kb on - strand, within MIT1002_00208at 231.121 kb on - strand, within MIT1002_00208at 231.121 kb on - strand, within MIT1002_00208at 231.163 kb on + strand, within MIT1002_00208at 231.269 kb on + strand, within MIT1002_00208at 231.279 kb on + strand, within MIT1002_00208at 231.287 kb on - strand, within MIT1002_00208at 231.287 kb on - strand, within MIT1002_00208at 231.306 kb on + strand, within MIT1002_00208at 231.314 kb on - strand, within MIT1002_00208at 231.404 kb on + strand, within MIT1002_00208at 231.416 kb on + strand, within MIT1002_00208at 231.434 kb on + strand, within MIT1002_00208at 231.449 kb on + strand, within MIT1002_00208at 231.457 kb on - strand, within MIT1002_00208at 231.479 kb on - strand, within MIT1002_00208at 231.521 kb on + strand, within MIT1002_00208at 231.526 kb on + strand, within MIT1002_00208at 231.529 kb on - strand, within MIT1002_00208at 231.529 kb on - strand, within MIT1002_00208at 231.539 kb on - strand, within MIT1002_00208at 231.590 kb on - strand, within MIT1002_00208at 231.610 kb on + strandat 231.613 kb on - strandat 231.706 kb on + strandat 231.706 kb on + strandat 231.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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228,115 + +0.8
228,115 + +1.9
228,123 - -0.4
228,123 - -0.4
228,160 - MIT1002_00205 0.13 +0.6
228,160 - MIT1002_00205 0.13 +0.3
228,324 + MIT1002_00205 0.38 -0.6
228,331 - MIT1002_00205 0.39 +0.8
228,339 + MIT1002_00205 0.41 +0.8
228,393 + MIT1002_00205 0.49 +1.2
228,393 + MIT1002_00205 0.49 +1.1
228,423 + MIT1002_00205 0.54 -1.1
228,423 + MIT1002_00205 0.54 +1.0
228,431 - MIT1002_00205 0.55 -0.7
228,521 - MIT1002_00205 0.69 +0.6
228,569 + MIT1002_00205 0.76 +1.0
228,587 + MIT1002_00205 0.79 -1.6
228,597 + MIT1002_00205 0.80 +1.3
228,605 - MIT1002_00205 0.82 +3.2
228,605 - MIT1002_00205 0.82 +2.2
228,631 + MIT1002_00205 0.86 +1.5
228,673 + -0.2
228,673 + -1.9
228,673 + +2.0
228,673 + +0.6
228,681 - +0.7
228,688 - +0.8
228,720 + +0.9
228,741 - -1.4
228,845 - MIT1002_00206 0.35 +1.6
228,901 + MIT1002_00206 0.52 -0.4
228,904 - MIT1002_00206 0.53 +1.2
228,955 + MIT1002_00206 0.69 +2.0
229,072 + -0.4
229,136 - -0.9
229,176 - +0.8
229,176 - +1.2
229,197 + +0.4
229,198 - -0.3
229,227 - MIT1002_00207 0.11 +0.6
229,244 + MIT1002_00207 0.12 +0.7
229,251 - MIT1002_00207 0.12 +2.2
229,251 - MIT1002_00207 0.12 +1.1
229,251 - MIT1002_00207 0.12 +1.2
229,293 + MIT1002_00207 0.15 -0.6
229,293 + MIT1002_00207 0.15 +0.3
229,301 - MIT1002_00207 0.15 +1.1
229,336 + MIT1002_00207 0.17 +0.7
229,337 + MIT1002_00207 0.17 +1.6
229,337 + MIT1002_00207 0.17 -1.6
229,344 - MIT1002_00207 0.18 -2.3
229,344 - MIT1002_00207 0.18 +1.1
229,352 - MIT1002_00207 0.18 +0.1
229,380 + MIT1002_00207 0.20 +0.8
229,420 - MIT1002_00207 0.22 +0.3
229,474 + MIT1002_00207 0.25 -1.2
229,474 + MIT1002_00207 0.25 +0.1
229,482 - MIT1002_00207 0.25 +2.5
229,515 + MIT1002_00207 0.27 +0.2
229,551 - MIT1002_00207 0.29 +0.9
229,610 + MIT1002_00207 0.33 -2.9
229,678 - MIT1002_00207 0.37 +0.3
229,775 + MIT1002_00207 0.42 -0.1
229,775 - MIT1002_00207 0.42 +1.8
229,785 + MIT1002_00207 0.43 -0.9
229,793 - MIT1002_00207 0.43 +1.6
229,797 + MIT1002_00207 0.43 -1.1
229,819 - MIT1002_00207 0.45 +0.5
229,826 + MIT1002_00207 0.45 +0.2
229,834 - MIT1002_00207 0.46 +1.2
229,834 - MIT1002_00207 0.46 +0.8
229,898 + MIT1002_00207 0.49 -0.9
229,920 - MIT1002_00207 0.50 +1.0
229,932 + MIT1002_00207 0.51 +0.2
229,932 + MIT1002_00207 0.51 +1.1
229,932 + MIT1002_00207 0.51 +1.2
230,013 + MIT1002_00207 0.56 +0.4
230,118 + MIT1002_00207 0.62 +2.0
230,204 + MIT1002_00207 0.67 +0.8
230,221 + MIT1002_00207 0.68 -2.2
230,221 + MIT1002_00207 0.68 -1.4
230,228 - MIT1002_00207 0.68 +1.2
230,228 - MIT1002_00207 0.68 +0.2
230,228 - MIT1002_00207 0.68 +1.1
230,228 - MIT1002_00207 0.68 -0.3
230,257 + MIT1002_00207 0.70 -1.4
230,304 + MIT1002_00207 0.72 +1.2
230,380 + MIT1002_00207 0.77 -1.4
230,422 - MIT1002_00207 0.79 -0.6
230,456 - MIT1002_00207 0.81 +1.1
230,510 + MIT1002_00207 0.84 +0.8
230,674 + -0.4
230,679 + +0.1
230,682 - +0.7
230,682 - +1.1
230,695 - -0.8
230,704 + +0.4
230,755 + -0.7
230,755 + +0.5
230,866 + +2.1
230,904 + MIT1002_00208 0.13 +0.6
230,904 + MIT1002_00208 0.13 -0.3
230,907 - MIT1002_00208 0.13 +1.7
231,020 + MIT1002_00208 0.26 +1.0
231,064 + MIT1002_00208 0.31 +1.2
231,111 - MIT1002_00208 0.36 +0.2
231,121 - MIT1002_00208 0.37 +1.6
231,121 - MIT1002_00208 0.37 +0.3
231,163 + MIT1002_00208 0.42 +0.5
231,269 + MIT1002_00208 0.53 +0.6
231,279 + MIT1002_00208 0.54 +0.4
231,287 - MIT1002_00208 0.55 -0.2
231,287 - MIT1002_00208 0.55 +0.7
231,306 + MIT1002_00208 0.57 +1.2
231,314 - MIT1002_00208 0.58 +0.2
231,404 + MIT1002_00208 0.68 +0.9
231,416 + MIT1002_00208 0.70 +0.6
231,434 + MIT1002_00208 0.72 +0.4
231,449 + MIT1002_00208 0.73 +1.1
231,457 - MIT1002_00208 0.74 -0.0
231,479 - MIT1002_00208 0.77 +1.0
231,521 + MIT1002_00208 0.81 +0.9
231,526 + MIT1002_00208 0.82 -1.1
231,529 - MIT1002_00208 0.82 +0.4
231,529 - MIT1002_00208 0.82 +1.6
231,539 - MIT1002_00208 0.83 +1.8
231,590 - MIT1002_00208 0.89 -0.2
231,610 + +0.2
231,613 - -0.8
231,706 + +0.5
231,706 + -1.1
231,760 - -2.0

Or see this region's nucleotide sequence