Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00203

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00201 and MIT1002_00202 are separated by 135 nucleotidesMIT1002_00202 and MIT1002_00203 are separated by 166 nucleotidesMIT1002_00203 and MIT1002_00204 overlap by 4 nucleotidesMIT1002_00204 and MIT1002_00205 overlap by 26 nucleotides MIT1002_00201: MIT1002_00201 - hypothetical protein, at 225,174 to 225,758 _00201 MIT1002_00202: MIT1002_00202 - hypothetical protein, at 225,894 to 226,397 _00202 MIT1002_00203: MIT1002_00203 - hypothetical protein, at 226,564 to 227,478 _00203 MIT1002_00204: MIT1002_00204 - Fimbrial assembly protein (PilN), at 227,475 to 228,101 _00204 MIT1002_00205: MIT1002_00205 - General secretion pathway, M protein, at 228,076 to 228,723 _00205 Position (kb) 226 227 228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 225.578 kb on + strand, within MIT1002_00201at 225.596 kb on - strand, within MIT1002_00201at 225.633 kb on + strand, within MIT1002_00201at 225.636 kb on - strand, within MIT1002_00201at 225.659 kb on + strand, within MIT1002_00201at 225.904 kb on - strandat 225.944 kb on + strandat 225.978 kb on - strand, within MIT1002_00202at 225.978 kb on - strand, within MIT1002_00202at 226.126 kb on + strand, within MIT1002_00202at 226.165 kb on + strand, within MIT1002_00202at 226.189 kb on + strand, within MIT1002_00202at 226.203 kb on + strand, within MIT1002_00202at 226.242 kb on + strand, within MIT1002_00202at 226.261 kb on + strand, within MIT1002_00202at 226.269 kb on - strand, within MIT1002_00202at 226.280 kb on + strand, within MIT1002_00202at 226.280 kb on + strand, within MIT1002_00202at 226.559 kb on - strandat 226.618 kb on + strandat 226.638 kb on + strandat 226.659 kb on + strand, within MIT1002_00203at 226.744 kb on + strand, within MIT1002_00203at 226.798 kb on + strand, within MIT1002_00203at 226.803 kb on + strand, within MIT1002_00203at 226.816 kb on - strand, within MIT1002_00203at 226.821 kb on - strand, within MIT1002_00203at 226.845 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on - strand, within MIT1002_00203at 226.871 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.898 kb on - strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.917 kb on - strand, within MIT1002_00203at 226.941 kb on - strand, within MIT1002_00203at 226.941 kb on - strand, within MIT1002_00203at 226.966 kb on - strand, within MIT1002_00203at 226.983 kb on - strand, within MIT1002_00203at 227.007 kb on + strand, within MIT1002_00203at 227.061 kb on - strand, within MIT1002_00203at 227.083 kb on + strand, within MIT1002_00203at 227.116 kb on + strand, within MIT1002_00203at 227.126 kb on - strand, within MIT1002_00203at 227.232 kb on - strand, within MIT1002_00203at 227.269 kb on - strand, within MIT1002_00203at 227.415 kb on + strandat 227.493 kb on - strandat 227.506 kb on + strandat 227.600 kb on + strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.610 kb on - strand, within MIT1002_00204at 227.622 kb on - strand, within MIT1002_00204at 227.622 kb on - strand, within MIT1002_00204at 227.781 kb on + strand, within MIT1002_00204at 227.799 kb on - strand, within MIT1002_00204at 227.865 kb on - strand, within MIT1002_00204at 227.907 kb on - strand, within MIT1002_00204at 227.913 kb on + strand, within MIT1002_00204at 227.913 kb on + strand, within MIT1002_00204at 227.941 kb on - strand, within MIT1002_00204at 227.941 kb on - strand, within MIT1002_00204at 228.003 kb on - strand, within MIT1002_00204at 228.115 kb on + strandat 228.115 kb on + strandat 228.123 kb on - strandat 228.123 kb on - strandat 228.160 kb on - strand, within MIT1002_00205at 228.160 kb on - strand, within MIT1002_00205at 228.324 kb on + strand, within MIT1002_00205at 228.331 kb on - strand, within MIT1002_00205at 228.339 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.393 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.423 kb on + strand, within MIT1002_00205at 228.431 kb on - strand, within MIT1002_00205

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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225,578 + MIT1002_00201 0.69 -0.7
225,596 - MIT1002_00201 0.72 -0.0
225,633 + MIT1002_00201 0.78 +0.3
225,636 - MIT1002_00201 0.79 -1.5
225,659 + MIT1002_00201 0.83 -0.8
225,904 - +0.3
225,944 + +0.5
225,978 - MIT1002_00202 0.17 -0.3
225,978 - MIT1002_00202 0.17 -0.5
226,126 + MIT1002_00202 0.46 -4.0
226,165 + MIT1002_00202 0.54 -1.6
226,189 + MIT1002_00202 0.59 -1.1
226,203 + MIT1002_00202 0.61 -0.5
226,242 + MIT1002_00202 0.69 -1.5
226,261 + MIT1002_00202 0.73 -1.4
226,269 - MIT1002_00202 0.74 -1.1
226,280 + MIT1002_00202 0.77 -1.9
226,280 + MIT1002_00202 0.77 -1.2
226,559 - -0.1
226,618 + -0.5
226,638 + -0.2
226,659 + MIT1002_00203 0.10 +1.1
226,744 + MIT1002_00203 0.20 +0.6
226,798 + MIT1002_00203 0.26 +0.3
226,803 + MIT1002_00203 0.26 +1.2
226,816 - MIT1002_00203 0.28 +0.5
226,821 - MIT1002_00203 0.28 +0.7
226,845 + MIT1002_00203 0.31 -0.5
226,871 + MIT1002_00203 0.34 +1.9
226,871 + MIT1002_00203 0.34 +1.0
226,871 + MIT1002_00203 0.34 +0.7
226,871 - MIT1002_00203 0.34 +0.7
226,871 - MIT1002_00203 0.34 -0.0
226,879 - MIT1002_00203 0.34 -0.2
226,879 - MIT1002_00203 0.34 +2.4
226,879 - MIT1002_00203 0.34 -0.0
226,879 - MIT1002_00203 0.34 +0.8
226,898 - MIT1002_00203 0.37 +1.0
226,909 + MIT1002_00203 0.38 +2.3
226,909 + MIT1002_00203 0.38 +1.2
226,909 + MIT1002_00203 0.38 -0.2
226,909 + MIT1002_00203 0.38 +0.3
226,909 + MIT1002_00203 0.38 +0.7
226,909 + MIT1002_00203 0.38 +1.3
226,909 + MIT1002_00203 0.38 +0.2
226,917 - MIT1002_00203 0.39 +0.5
226,941 - MIT1002_00203 0.41 +1.9
226,941 - MIT1002_00203 0.41 +0.7
226,966 - MIT1002_00203 0.44 +0.5
226,983 - MIT1002_00203 0.46 -0.6
227,007 + MIT1002_00203 0.48 +1.6
227,061 - MIT1002_00203 0.54 +0.5
227,083 + MIT1002_00203 0.57 -0.3
227,116 + MIT1002_00203 0.60 -1.5
227,126 - MIT1002_00203 0.61 +2.2
227,232 - MIT1002_00203 0.73 +0.9
227,269 - MIT1002_00203 0.77 +1.6
227,415 + +1.2
227,493 - +0.3
227,506 + +0.6
227,600 + MIT1002_00204 0.20 +0.7
227,610 - MIT1002_00204 0.22 +0.8
227,610 - MIT1002_00204 0.22 +0.0
227,610 - MIT1002_00204 0.22 +0.7
227,610 - MIT1002_00204 0.22 +0.8
227,622 - MIT1002_00204 0.23 +0.5
227,622 - MIT1002_00204 0.23 +0.6
227,781 + MIT1002_00204 0.49 +0.1
227,799 - MIT1002_00204 0.52 -1.9
227,865 - MIT1002_00204 0.62 -2.5
227,907 - MIT1002_00204 0.69 +0.8
227,913 + MIT1002_00204 0.70 +0.2
227,913 + MIT1002_00204 0.70 -0.9
227,941 - MIT1002_00204 0.74 +1.5
227,941 - MIT1002_00204 0.74 +0.3
228,003 - MIT1002_00204 0.84 +0.9
228,115 + +0.8
228,115 + +1.9
228,123 - -0.4
228,123 - -0.4
228,160 - MIT1002_00205 0.13 +0.6
228,160 - MIT1002_00205 0.13 +0.3
228,324 + MIT1002_00205 0.38 -0.6
228,331 - MIT1002_00205 0.39 +0.8
228,339 + MIT1002_00205 0.41 +0.8
228,393 + MIT1002_00205 0.49 +1.2
228,393 + MIT1002_00205 0.49 +1.1
228,423 + MIT1002_00205 0.54 -1.1
228,423 + MIT1002_00205 0.54 +1.0
228,431 - MIT1002_00205 0.55 -0.7

Or see this region's nucleotide sequence