Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00187

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00186 and MIT1002_00187 are separated by 328 nucleotidesMIT1002_00187 and MIT1002_00188 are separated by 172 nucleotides MIT1002_00186: MIT1002_00186 - Mgl repressor and galactose ultrainduction factor, at 202,127 to 203,128 _00186 MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476 _00187 MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704 _00188 Position (kb) 203 204 205Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 202.458 kb on + strand, within MIT1002_00186at 202.462 kb on - strand, within MIT1002_00186at 202.505 kb on + strand, within MIT1002_00186at 202.538 kb on - strand, within MIT1002_00186at 202.540 kb on + strand, within MIT1002_00186at 202.560 kb on - strand, within MIT1002_00186at 202.605 kb on - strand, within MIT1002_00186at 202.616 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.717 kb on - strand, within MIT1002_00186at 202.746 kb on - strand, within MIT1002_00186at 202.763 kb on - strand, within MIT1002_00186at 202.768 kb on - strand, within MIT1002_00186at 202.776 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.845 kb on - strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.940 kb on + strand, within MIT1002_00186at 202.986 kb on - strand, within MIT1002_00186at 203.047 kb on + strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.235 kb on - strandat 203.265 kb on + strandat 203.292 kb on + strandat 203.321 kb on - strandat 203.358 kb on - strandat 203.509 kb on + strandat 203.531 kb on + strandat 203.531 kb on + strandat 203.539 kb on + strandat 203.544 kb on + strandat 203.614 kb on - strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.639 kb on + strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.644 kb on + strand, within MIT1002_00187at 203.647 kb on - strand, within MIT1002_00187at 203.689 kb on - strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.725 kb on + strand, within MIT1002_00187at 203.728 kb on - strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.771 kb on - strand, within MIT1002_00187at 203.798 kb on + strand, within MIT1002_00187at 203.806 kb on - strand, within MIT1002_00187at 203.827 kb on - strand, within MIT1002_00187at 203.858 kb on - strand, within MIT1002_00187at 203.868 kb on - strand, within MIT1002_00187at 203.871 kb on + strand, within MIT1002_00187at 203.980 kb on + strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.165 kb on - strand, within MIT1002_00187at 204.195 kb on + strand, within MIT1002_00187at 204.202 kb on - strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.220 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.244 kb on + strand, within MIT1002_00187at 204.272 kb on - strand, within MIT1002_00187at 204.310 kb on - strand, within MIT1002_00187at 204.325 kb on - strand, within MIT1002_00187at 204.350 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.358 kb on - strand, within MIT1002_00187at 204.627 kb on + strandat 204.639 kb on - strandat 204.659 kb on + strandat 204.666 kb on - strandat 204.698 kb on - strandat 204.698 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.723 kb on - strandat 204.843 kb on + strand, within MIT1002_00188at 204.843 kb on + strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.893 kb on + strand, within MIT1002_00188at 204.901 kb on - strand, within MIT1002_00188at 204.918 kb on - strand, within MIT1002_00188at 204.965 kb on - strand, within MIT1002_00188at 205.061 kb on + strand, within MIT1002_00188at 205.096 kb on - strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.203 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on - strand, within MIT1002_00188at 205.245 kb on + strand, within MIT1002_00188at 205.305 kb on + strand, within MIT1002_00188at 205.323 kb on - strand, within MIT1002_00188at 205.356 kb on - strand, within MIT1002_00188

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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202,458 + MIT1002_00186 0.33 +2.9
202,462 - MIT1002_00186 0.33 +5.8
202,505 + MIT1002_00186 0.38 +5.2
202,538 - MIT1002_00186 0.41 +3.9
202,540 + MIT1002_00186 0.41 +3.9
202,560 - MIT1002_00186 0.43 +4.2
202,605 - MIT1002_00186 0.48 +3.6
202,616 + MIT1002_00186 0.49 +3.9
202,709 + MIT1002_00186 0.58 +3.1
202,709 + MIT1002_00186 0.58 +4.7
202,717 - MIT1002_00186 0.59 +3.6
202,746 - MIT1002_00186 0.62 +4.3
202,763 - MIT1002_00186 0.63 +4.1
202,768 - MIT1002_00186 0.64 +3.8
202,776 - MIT1002_00186 0.65 +4.1
202,807 - MIT1002_00186 0.68 -3.2
202,807 - MIT1002_00186 0.68 +3.9
202,845 - MIT1002_00186 0.72 +6.2
202,895 + MIT1002_00186 0.77 +4.2
202,895 + MIT1002_00186 0.77 +2.4
202,903 - MIT1002_00186 0.77 +4.3
202,903 - MIT1002_00186 0.77 +3.1
202,940 + MIT1002_00186 0.81 +4.2
202,986 - MIT1002_00186 0.86 +3.8
203,047 + +4.3
203,055 - +5.4
203,055 - +3.9
203,055 - +4.3
203,055 - +5.2
203,068 + +3.8
203,068 + +4.1
203,068 + +4.5
203,068 + +4.1
203,076 - +3.8
203,076 - +3.5
203,076 - -0.2
203,235 - +0.2
203,265 + -0.2
203,292 + +1.7
203,321 - -0.3
203,358 - -0.5
203,509 + +4.4
203,531 + +4.5
203,531 + +4.2
203,539 + +4.2
203,544 + +4.5
203,614 - MIT1002_00187 0.15 +4.2
203,634 + MIT1002_00187 0.17 +4.3
203,634 + MIT1002_00187 0.17 +4.8
203,634 + MIT1002_00187 0.17 +5.8
203,634 + MIT1002_00187 0.17 +4.1
203,639 + MIT1002_00187 0.18 +4.5
203,642 - MIT1002_00187 0.18 +3.9
203,642 - MIT1002_00187 0.18 +3.4
203,642 - MIT1002_00187 0.18 +3.9
203,644 + MIT1002_00187 0.18 +3.8
203,647 - MIT1002_00187 0.19 +5.1
203,689 - MIT1002_00187 0.23 +4.6
203,720 + MIT1002_00187 0.26 +4.4
203,720 + MIT1002_00187 0.26 +4.8
203,725 + MIT1002_00187 0.26 +5.4
203,728 - MIT1002_00187 0.27 +4.2
203,730 + MIT1002_00187 0.27 +4.9
203,730 + MIT1002_00187 0.27 +4.5
203,730 + MIT1002_00187 0.27 +4.5
203,738 - MIT1002_00187 0.28 +5.3
203,738 - MIT1002_00187 0.28 +4.5
203,738 - MIT1002_00187 0.28 +2.9
203,738 - MIT1002_00187 0.28 +4.5
203,771 - MIT1002_00187 0.31 +4.3
203,798 + MIT1002_00187 0.33 +5.1
203,806 - MIT1002_00187 0.34 +4.4
203,827 - MIT1002_00187 0.36 +4.1
203,858 - MIT1002_00187 0.39 +3.8
203,868 - MIT1002_00187 0.40 +5.2
203,871 + MIT1002_00187 0.41 +3.9
203,980 + MIT1002_00187 0.51 +4.7
204,034 - MIT1002_00187 0.57 +5.8
204,034 - MIT1002_00187 0.57 +4.8
204,165 - MIT1002_00187 0.69 +4.6
204,195 + MIT1002_00187 0.72 +4.0
204,202 - MIT1002_00187 0.73 +5.6
204,214 + MIT1002_00187 0.74 +4.7
204,214 + MIT1002_00187 0.74 +4.8
204,214 + MIT1002_00187 0.74 +5.0
204,214 + MIT1002_00187 0.74 +3.4
204,220 - MIT1002_00187 0.75 +5.0
204,222 - MIT1002_00187 0.75 +4.1
204,222 - MIT1002_00187 0.75 +4.4
204,222 - MIT1002_00187 0.75 +4.4
204,222 - MIT1002_00187 0.75 +4.8
204,240 - MIT1002_00187 0.77 +4.0
204,240 - MIT1002_00187 0.77 +4.6
204,244 + MIT1002_00187 0.77 +5.3
204,272 - MIT1002_00187 0.80 +5.6
204,310 - MIT1002_00187 0.84 +3.1
204,325 - MIT1002_00187 0.85 +4.4
204,350 + MIT1002_00187 0.88 +4.3
204,357 + MIT1002_00187 0.88 +4.3
204,357 + MIT1002_00187 0.88 +5.1
204,358 - MIT1002_00187 0.88 +3.9
204,627 + +0.6
204,639 - -2.6
204,659 + -4.4
204,666 - -2.5
204,698 - -3.5
204,698 - -2.3
204,715 + -3.5
204,715 + -0.8
204,723 - -4.2
204,843 + MIT1002_00188 0.18 -2.3
204,843 + MIT1002_00188 0.18 -4.0
204,851 - MIT1002_00188 0.19 -3.3
204,851 - MIT1002_00188 0.19 -4.8
204,893 + MIT1002_00188 0.23 -2.6
204,901 - MIT1002_00188 0.24 -0.9
204,918 - MIT1002_00188 0.25 -1.3
204,965 - MIT1002_00188 0.30 -2.8
205,061 + MIT1002_00188 0.39 -1.1
205,096 - MIT1002_00188 0.42 -4.9
205,127 + MIT1002_00188 0.45 -2.6
205,127 + MIT1002_00188 0.45 -2.8
205,135 - MIT1002_00188 0.46 -4.4
205,135 - MIT1002_00188 0.46 -1.2
205,203 + MIT1002_00188 0.52 -0.2
205,240 + MIT1002_00188 0.56 -1.4
205,240 + MIT1002_00188 0.56 -4.5
205,240 - MIT1002_00188 0.56 -3.9
205,245 + MIT1002_00188 0.56 -2.2
205,305 + MIT1002_00188 0.62 -5.6
205,323 - MIT1002_00188 0.64 -5.2
205,356 - MIT1002_00188 0.67 -1.9

Or see this region's nucleotide sequence