Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00053

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00051 and MIT1002_00052 overlap by 1 nucleotidesMIT1002_00052 and MIT1002_00053 overlap by 4 nucleotidesMIT1002_00053 and MIT1002_00054 are separated by 337 nucleotidesMIT1002_00054 and MIT1002_00055 are separated by 11 nucleotides MIT1002_00051: MIT1002_00051 - hypothetical protein, at 56,954 to 57,643 _00051 MIT1002_00052: MIT1002_00052 - hypothetical protein, at 57,643 to 58,392 _00052 MIT1002_00053: MIT1002_00053 - hypothetical protein, at 58,389 to 60,491 _00053 MIT1002_00054: MIT1002_00054 - 50S ribosomal protein L28, at 60,829 to 61,065 _00054 MIT1002_00055: MIT1002_00055 - 50S ribosomal protein L33, at 61,077 to 61,232 _00055 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 57.403 kb on - strand, within MIT1002_00051at 57.491 kb on + strand, within MIT1002_00051at 57.491 kb on + strand, within MIT1002_00051at 57.491 kb on + strand, within MIT1002_00051at 57.499 kb on - strand, within MIT1002_00051at 57.546 kb on + strand, within MIT1002_00051at 57.608 kb on - strandat 57.624 kb on + strandat 57.671 kb on + strandat 57.671 kb on + strandat 57.671 kb on + strandat 57.678 kb on - strandat 57.791 kb on - strand, within MIT1002_00052at 57.810 kb on + strand, within MIT1002_00052at 57.818 kb on - strand, within MIT1002_00052at 57.831 kb on - strand, within MIT1002_00052at 57.892 kb on + strand, within MIT1002_00052at 57.926 kb on + strand, within MIT1002_00052at 57.965 kb on + strand, within MIT1002_00052at 57.973 kb on - strand, within MIT1002_00052at 57.983 kb on - strand, within MIT1002_00052at 57.990 kb on - strand, within MIT1002_00052at 58.051 kb on + strand, within MIT1002_00052at 58.088 kb on - strand, within MIT1002_00052at 58.108 kb on + strand, within MIT1002_00052at 58.132 kb on + strand, within MIT1002_00052at 58.157 kb on - strand, within MIT1002_00052at 58.198 kb on + strand, within MIT1002_00052at 58.250 kb on - strand, within MIT1002_00052at 58.283 kb on - strand, within MIT1002_00052at 58.296 kb on + strand, within MIT1002_00052at 58.300 kb on + strand, within MIT1002_00052at 58.318 kb on - strandat 58.379 kb on - strandat 58.384 kb on - strandat 58.449 kb on - strandat 58.458 kb on - strandat 58.480 kb on + strandat 58.507 kb on + strandat 58.571 kb on - strandat 58.648 kb on + strand, within MIT1002_00053at 58.656 kb on - strand, within MIT1002_00053at 58.665 kb on + strand, within MIT1002_00053at 58.688 kb on + strand, within MIT1002_00053at 58.727 kb on - strand, within MIT1002_00053at 58.855 kb on + strand, within MIT1002_00053at 58.863 kb on - strand, within MIT1002_00053at 58.863 kb on - strand, within MIT1002_00053at 58.863 kb on - strand, within MIT1002_00053at 58.866 kb on + strand, within MIT1002_00053at 58.874 kb on - strand, within MIT1002_00053at 58.874 kb on - strand, within MIT1002_00053at 58.953 kb on - strand, within MIT1002_00053at 59.057 kb on + strand, within MIT1002_00053at 59.106 kb on - strand, within MIT1002_00053at 59.142 kb on + strand, within MIT1002_00053at 59.157 kb on - strand, within MIT1002_00053at 59.183 kb on + strand, within MIT1002_00053at 59.194 kb on - strand, within MIT1002_00053at 59.194 kb on - strand, within MIT1002_00053at 59.262 kb on + strand, within MIT1002_00053at 59.350 kb on + strand, within MIT1002_00053at 59.350 kb on + strand, within MIT1002_00053at 59.358 kb on - strand, within MIT1002_00053at 59.401 kb on + strand, within MIT1002_00053at 59.409 kb on - strand, within MIT1002_00053at 59.409 kb on - strand, within MIT1002_00053at 59.426 kb on + strand, within MIT1002_00053at 59.448 kb on + strand, within MIT1002_00053at 59.499 kb on + strand, within MIT1002_00053at 59.514 kb on + strand, within MIT1002_00053at 59.514 kb on + strand, within MIT1002_00053at 59.522 kb on - strand, within MIT1002_00053at 59.522 kb on - strand, within MIT1002_00053at 59.682 kb on + strand, within MIT1002_00053at 59.710 kb on + strand, within MIT1002_00053at 59.729 kb on + strand, within MIT1002_00053at 59.777 kb on - strand, within MIT1002_00053at 59.777 kb on - strand, within MIT1002_00053at 59.784 kb on + strand, within MIT1002_00053at 59.792 kb on - strand, within MIT1002_00053at 59.800 kb on + strand, within MIT1002_00053at 59.800 kb on + strand, within MIT1002_00053at 59.800 kb on + strand, within MIT1002_00053at 59.844 kb on - strand, within MIT1002_00053at 59.856 kb on - strand, within MIT1002_00053at 59.926 kb on - strand, within MIT1002_00053at 59.960 kb on + strand, within MIT1002_00053at 59.960 kb on + strand, within MIT1002_00053at 59.967 kb on + strand, within MIT1002_00053at 60.105 kb on - strand, within MIT1002_00053at 60.118 kb on + strand, within MIT1002_00053at 60.126 kb on - strand, within MIT1002_00053at 60.227 kb on - strand, within MIT1002_00053at 60.254 kb on + strand, within MIT1002_00053at 60.357 kb on - strandat 60.364 kb on + strandat 60.364 kb on + strandat 60.372 kb on - strandat 60.372 kb on - strandat 60.424 kb on + strandat 60.622 kb on - strandat 60.622 kb on - strandat 61.137 kb on - strand, within MIT1002_00055at 61.248 kb on - strandat 61.302 kb on - strandat 61.352 kb on + strandat 61.352 kb on - strandat 61.352 kb on - strandat 61.378 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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57,403 - MIT1002_00051 0.65 -0.5
57,491 + MIT1002_00051 0.78 +1.3
57,491 + MIT1002_00051 0.78 +1.6
57,491 + MIT1002_00051 0.78 +0.9
57,499 - MIT1002_00051 0.79 -0.6
57,546 + MIT1002_00051 0.86 +0.9
57,608 - +0.7
57,624 + +0.7
57,671 + +0.4
57,671 + +0.7
57,671 + -0.3
57,678 - +0.8
57,791 - MIT1002_00052 0.20 -0.8
57,810 + MIT1002_00052 0.22 +0.5
57,818 - MIT1002_00052 0.23 +0.5
57,831 - MIT1002_00052 0.25 +1.3
57,892 + MIT1002_00052 0.33 -1.0
57,926 + MIT1002_00052 0.38 +0.4
57,965 + MIT1002_00052 0.43 +1.0
57,973 - MIT1002_00052 0.44 +0.4
57,983 - MIT1002_00052 0.45 -1.6
57,990 - MIT1002_00052 0.46 +0.1
58,051 + MIT1002_00052 0.54 -1.8
58,088 - MIT1002_00052 0.59 +1.8
58,108 + MIT1002_00052 0.62 +1.3
58,132 + MIT1002_00052 0.65 +1.1
58,157 - MIT1002_00052 0.69 -0.3
58,198 + MIT1002_00052 0.74 -1.1
58,250 - MIT1002_00052 0.81 +0.7
58,283 - MIT1002_00052 0.85 +1.2
58,296 + MIT1002_00052 0.87 +0.3
58,300 + MIT1002_00052 0.88 -1.4
58,318 - -1.3
58,379 - +0.8
58,384 - +0.2
58,449 - +0.9
58,458 - +0.8
58,480 + +1.9
58,507 + +0.0
58,571 - +1.1
58,648 + MIT1002_00053 0.12 -2.8
58,656 - MIT1002_00053 0.13 -0.5
58,665 + MIT1002_00053 0.13 +0.9
58,688 + MIT1002_00053 0.14 +0.7
58,727 - MIT1002_00053 0.16 +2.0
58,855 + MIT1002_00053 0.22 +1.8
58,863 - MIT1002_00053 0.23 +0.2
58,863 - MIT1002_00053 0.23 +1.5
58,863 - MIT1002_00053 0.23 +1.0
58,866 + MIT1002_00053 0.23 +1.5
58,874 - MIT1002_00053 0.23 -1.8
58,874 - MIT1002_00053 0.23 +0.9
58,953 - MIT1002_00053 0.27 +1.8
59,057 + MIT1002_00053 0.32 +0.8
59,106 - MIT1002_00053 0.34 +0.6
59,142 + MIT1002_00053 0.36 +1.4
59,157 - MIT1002_00053 0.37 +1.4
59,183 + MIT1002_00053 0.38 +0.4
59,194 - MIT1002_00053 0.38 +2.4
59,194 - MIT1002_00053 0.38 -1.0
59,262 + MIT1002_00053 0.42 +1.4
59,350 + MIT1002_00053 0.46 +0.8
59,350 + MIT1002_00053 0.46 +0.4
59,358 - MIT1002_00053 0.46 +2.7
59,401 + MIT1002_00053 0.48 +1.2
59,409 - MIT1002_00053 0.49 +0.2
59,409 - MIT1002_00053 0.49 -1.4
59,426 + MIT1002_00053 0.49 -1.7
59,448 + MIT1002_00053 0.50 +0.8
59,499 + MIT1002_00053 0.53 +0.3
59,514 + MIT1002_00053 0.53 +0.0
59,514 + MIT1002_00053 0.53 +0.2
59,522 - MIT1002_00053 0.54 +1.0
59,522 - MIT1002_00053 0.54 -1.9
59,682 + MIT1002_00053 0.61 -0.2
59,710 + MIT1002_00053 0.63 +0.6
59,729 + MIT1002_00053 0.64 -0.7
59,777 - MIT1002_00053 0.66 -0.1
59,777 - MIT1002_00053 0.66 +0.8
59,784 + MIT1002_00053 0.66 +0.1
59,792 - MIT1002_00053 0.67 +0.7
59,800 + MIT1002_00053 0.67 +0.9
59,800 + MIT1002_00053 0.67 +0.2
59,800 + MIT1002_00053 0.67 -0.6
59,844 - MIT1002_00053 0.69 +0.5
59,856 - MIT1002_00053 0.70 -1.2
59,926 - MIT1002_00053 0.73 -0.8
59,960 + MIT1002_00053 0.75 +1.6
59,960 + MIT1002_00053 0.75 +0.5
59,967 + MIT1002_00053 0.75 +1.1
60,105 - MIT1002_00053 0.82 +0.2
60,118 + MIT1002_00053 0.82 +0.7
60,126 - MIT1002_00053 0.83 +0.4
60,227 - MIT1002_00053 0.87 +0.1
60,254 + MIT1002_00053 0.89 +1.9
60,357 - +1.5
60,364 + -1.0
60,364 + -0.2
60,372 - -0.4
60,372 - +0.6
60,424 + +1.5
60,622 - -0.1
60,622 - -1.2
61,137 - MIT1002_00055 0.38 -2.1
61,248 - -2.2
61,302 - +1.2
61,352 + +0.6
61,352 - -0.9
61,352 - +0.2
61,378 + -0.2

Or see this region's nucleotide sequence