Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00050 and MIT1002_00051 are separated by 94 nucleotides MIT1002_00051 and MIT1002_00052 overlap by 1 nucleotides MIT1002_00052 and MIT1002_00053 overlap by 4 nucleotides
MIT1002_00050: MIT1002_00050 - hypothetical protein, at 56,506 to 56,859
_00050
MIT1002_00051: MIT1002_00051 - hypothetical protein, at 56,954 to 57,643
_00051
MIT1002_00052: MIT1002_00052 - hypothetical protein, at 57,643 to 58,392
_00052
MIT1002_00053: MIT1002_00053 - hypothetical protein, at 58,389 to 60,491
_00053
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.670 kb on + strand, within MIT1002_00050 at 56.744 kb on - strand, within MIT1002_00050 at 56.919 kb on + strand at 56.965 kb on - strand at 57.018 kb on - strand at 57.021 kb on + strand at 57.049 kb on - strand, within MIT1002_00051 at 57.265 kb on + strand, within MIT1002_00051 at 57.268 kb on - strand, within MIT1002_00051 at 57.363 kb on - strand, within MIT1002_00051 at 57.403 kb on - strand, within MIT1002_00051 at 57.491 kb on + strand, within MIT1002_00051 at 57.491 kb on + strand, within MIT1002_00051 at 57.491 kb on + strand, within MIT1002_00051 at 57.499 kb on - strand, within MIT1002_00051 at 57.546 kb on + strand, within MIT1002_00051 at 57.608 kb on - strand at 57.624 kb on + strand at 57.671 kb on + strand at 57.671 kb on + strand at 57.671 kb on + strand at 57.678 kb on - strand at 57.791 kb on - strand, within MIT1002_00052 at 57.810 kb on + strand, within MIT1002_00052 at 57.818 kb on - strand, within MIT1002_00052 at 57.831 kb on - strand, within MIT1002_00052 at 57.892 kb on + strand, within MIT1002_00052 at 57.926 kb on + strand, within MIT1002_00052 at 57.965 kb on + strand, within MIT1002_00052 at 57.973 kb on - strand, within MIT1002_00052 at 57.983 kb on - strand, within MIT1002_00052 at 57.990 kb on - strand, within MIT1002_00052 at 58.051 kb on + strand, within MIT1002_00052 at 58.088 kb on - strand, within MIT1002_00052 at 58.108 kb on + strand, within MIT1002_00052 at 58.132 kb on + strand, within MIT1002_00052 at 58.157 kb on - strand, within MIT1002_00052 at 58.198 kb on + strand, within MIT1002_00052 at 58.250 kb on - strand, within MIT1002_00052 at 58.283 kb on - strand, within MIT1002_00052 at 58.296 kb on + strand, within MIT1002_00052 at 58.300 kb on + strand, within MIT1002_00052 at 58.318 kb on - strand at 58.379 kb on - strand at 58.384 kb on - strand at 58.449 kb on - strand at 58.458 kb on - strand at 58.480 kb on + strand at 58.507 kb on + strand at 58.571 kb on - strand at 58.648 kb on + strand, within MIT1002_00053 at 58.656 kb on - strand, within MIT1002_00053 at 58.665 kb on + strand, within MIT1002_00053 at 58.688 kb on + strand, within MIT1002_00053 at 58.727 kb on - strand, within MIT1002_00053 at 58.855 kb on + strand, within MIT1002_00053 at 58.863 kb on - strand, within MIT1002_00053 at 58.863 kb on - strand, within MIT1002_00053 at 58.863 kb on - strand, within MIT1002_00053 at 58.866 kb on + strand, within MIT1002_00053 at 58.874 kb on - strand, within MIT1002_00053 at 58.874 kb on - strand, within MIT1002_00053 at 58.953 kb on - strand, within MIT1002_00053 at 59.057 kb on + strand, within MIT1002_00053 at 59.106 kb on - strand, within MIT1002_00053 at 59.142 kb on + strand, within MIT1002_00053 at 59.157 kb on - strand, within MIT1002_00053 at 59.183 kb on + strand, within MIT1002_00053 at 59.194 kb on - strand, within MIT1002_00053 at 59.194 kb on - strand, within MIT1002_00053 at 59.262 kb on + strand, within MIT1002_00053 at 59.350 kb on + strand, within MIT1002_00053 at 59.350 kb on + strand, within MIT1002_00053 at 59.358 kb on - strand, within MIT1002_00053
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 56,670 + MIT1002_00050 0.46 -0.1 56,744 - MIT1002_00050 0.67 +1.0 56,919 + -1.2 56,965 - -0.9 57,018 - +0.6 57,021 + +0.5 57,049 - MIT1002_00051 0.14 +2.3 57,265 + MIT1002_00051 0.45 +1.7 57,268 - MIT1002_00051 0.46 +0.2 57,363 - MIT1002_00051 0.59 +0.5 57,403 - MIT1002_00051 0.65 -0.5 57,491 + MIT1002_00051 0.78 +1.3 57,491 + MIT1002_00051 0.78 +1.6 57,491 + MIT1002_00051 0.78 +0.9 57,499 - MIT1002_00051 0.79 -0.6 57,546 + MIT1002_00051 0.86 +0.9 57,608 - +0.7 57,624 + +0.7 57,671 + +0.4 57,671 + +0.7 57,671 + -0.3 57,678 - +0.8 57,791 - MIT1002_00052 0.20 -0.8 57,810 + MIT1002_00052 0.22 +0.5 57,818 - MIT1002_00052 0.23 +0.5 57,831 - MIT1002_00052 0.25 +1.3 57,892 + MIT1002_00052 0.33 -1.0 57,926 + MIT1002_00052 0.38 +0.4 57,965 + MIT1002_00052 0.43 +1.0 57,973 - MIT1002_00052 0.44 +0.4 57,983 - MIT1002_00052 0.45 -1.6 57,990 - MIT1002_00052 0.46 +0.1 58,051 + MIT1002_00052 0.54 -1.8 58,088 - MIT1002_00052 0.59 +1.8 58,108 + MIT1002_00052 0.62 +1.3 58,132 + MIT1002_00052 0.65 +1.1 58,157 - MIT1002_00052 0.69 -0.3 58,198 + MIT1002_00052 0.74 -1.1 58,250 - MIT1002_00052 0.81 +0.7 58,283 - MIT1002_00052 0.85 +1.2 58,296 + MIT1002_00052 0.87 +0.3 58,300 + MIT1002_00052 0.88 -1.4 58,318 - -1.3 58,379 - +0.8 58,384 - +0.2 58,449 - +0.9 58,458 - +0.8 58,480 + +1.9 58,507 + +0.0 58,571 - +1.1 58,648 + MIT1002_00053 0.12 -2.8 58,656 - MIT1002_00053 0.13 -0.5 58,665 + MIT1002_00053 0.13 +0.9 58,688 + MIT1002_00053 0.14 +0.7 58,727 - MIT1002_00053 0.16 +2.0 58,855 + MIT1002_00053 0.22 +1.8 58,863 - MIT1002_00053 0.23 +0.2 58,863 - MIT1002_00053 0.23 +1.5 58,863 - MIT1002_00053 0.23 +1.0 58,866 + MIT1002_00053 0.23 +1.5 58,874 - MIT1002_00053 0.23 -1.8 58,874 - MIT1002_00053 0.23 +0.9 58,953 - MIT1002_00053 0.27 +1.8 59,057 + MIT1002_00053 0.32 +0.8 59,106 - MIT1002_00053 0.34 +0.6 59,142 + MIT1002_00053 0.36 +1.4 59,157 - MIT1002_00053 0.37 +1.4 59,183 + MIT1002_00053 0.38 +0.4 59,194 - MIT1002_00053 0.38 +2.4 59,194 - MIT1002_00053 0.38 -1.0 59,262 + MIT1002_00053 0.42 +1.4 59,350 + MIT1002_00053 0.46 +0.8 59,350 + MIT1002_00053 0.46 +0.4 59,358 - MIT1002_00053 0.46 +2.7
Or see this region's nucleotide sequence