Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS43795

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS43785 and QEN71_RS43790 overlap by 4 nucleotidesQEN71_RS43790 and QEN71_RS43795 are separated by 82 nucleotidesQEN71_RS43795 and QEN71_RS43800 are separated by 31 nucleotidesQEN71_RS43800 and QEN71_RS43805 are separated by 132 nucleotides QEN71_RS43785: QEN71_RS43785 - hypothetical protein, at 236,432 to 236,896 _RS43785 QEN71_RS43790: QEN71_RS43790 - hypothetical protein, at 236,893 to 237,285 _RS43790 QEN71_RS43795: QEN71_RS43795 - hypothetical protein, at 237,368 to 237,829 _RS43795 QEN71_RS43800: QEN71_RS43800 - hypothetical protein, at 237,861 to 238,184 _RS43800 QEN71_RS43805: QEN71_RS43805 - hypothetical protein, at 238,317 to 238,601 _RS43805 Position (kb) 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.463 kb on + strandat 236.463 kb on + strandat 236.464 kb on - strandat 236.464 kb on - strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.474 kb on + strandat 236.474 kb on + strandat 236.483 kb on + strand, within QEN71_RS43785at 236.483 kb on + strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.581 kb on + strand, within QEN71_RS43785at 236.582 kb on - strand, within QEN71_RS43785at 236.582 kb on - strand, within QEN71_RS43785at 236.675 kb on + strand, within QEN71_RS43785at 236.676 kb on - strand, within QEN71_RS43785at 236.676 kb on - strand, within QEN71_RS43785at 236.688 kb on + strand, within QEN71_RS43785at 236.688 kb on + strand, within QEN71_RS43785at 236.688 kb on + strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.869 kb on - strandat 236.869 kb on - strandat 236.869 kb on - strandat 236.960 kb on + strand, within QEN71_RS43790at 236.961 kb on - strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 237.024 kb on + strand, within QEN71_RS43790at 237.025 kb on - strand, within QEN71_RS43790at 237.099 kb on + strand, within QEN71_RS43790at 237.099 kb on + strand, within QEN71_RS43790at 237.099 kb on + strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.106 kb on - strand, within QEN71_RS43790at 237.106 kb on - strand, within QEN71_RS43790at 237.264 kb on - strandat 237.264 kb on - strandat 237.408 kb on + strandat 237.409 kb on - strandat 237.576 kb on + strand, within QEN71_RS43795at 237.576 kb on + strand, within QEN71_RS43795at 237.747 kb on + strand, within QEN71_RS43795at 237.747 kb on + strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.775 kb on + strand, within QEN71_RS43795at 237.775 kb on + strand, within QEN71_RS43795at 237.815 kb on - strandat 237.815 kb on - strandat 237.815 kb on - strandat 237.957 kb on + strand, within QEN71_RS43800at 237.957 kb on + strand, within QEN71_RS43800at 237.958 kb on - strand, within QEN71_RS43800at 237.958 kb on - strand, within QEN71_RS43800at 237.958 kb on - strand, within QEN71_RS43800at 238.072 kb on + strand, within QEN71_RS43800at 238.072 kb on + strand, within QEN71_RS43800at 238.072 kb on + strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.339 kb on + strandat 238.340 kb on - strandat 238.340 kb on - strandat 238.340 kb on - strandat 238.438 kb on + strand, within QEN71_RS43805at 238.438 kb on + strand, within QEN71_RS43805at 238.438 kb on + strand, within QEN71_RS43805at 238.438 kb on + strand, within QEN71_RS43805at 238.439 kb on - strand, within QEN71_RS43805at 238.439 kb on - strand, within QEN71_RS43805at 238.586 kb on + strandat 238.586 kb on + strandat 238.587 kb on - strandat 238.657 kb on + strandat 238.657 kb on + strandat 238.657 kb on + strandat 238.657 kb on + strandat 238.657 kb on + strandat 238.658 kb on - strandat 238.658 kb on - strandat 238.658 kb on - strandat 238.658 kb on - strandat 238.658 kb on - strandat 238.722 kb on - strandat 238.722 kb on - strandat 238.722 kb on - strandat 238.759 kb on + strandat 238.772 kb on + strandat 238.772 kb on + strandat 238.772 kb on + strandat 238.772 kb on + strandat 238.772 kb on + strandat 238.772 kb on + strandat 238.773 kb on - strandat 238.773 kb on - strandat 238.773 kb on - strandat 238.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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236,418 + +1.2
236,418 + -0.0
236,418 + -1.5
236,418 + +0.7
236,418 + +0.0
236,418 + +0.1
236,419 - +0.3
236,419 - +0.7
236,419 - +1.0
236,419 - -0.1
236,419 - +0.2
236,463 + -0.4
236,463 + -2.0
236,464 - -0.1
236,464 - +0.1
236,471 + +0.1
236,471 + -1.6
236,471 + -0.1
236,471 + +0.6
236,471 + -0.5
236,471 + -1.5
236,471 + -0.9
236,471 + -0.8
236,472 - -0.0
236,472 - -1.9
236,472 - -0.2
236,472 - -0.3
236,472 - +0.1
236,472 - -0.5
236,472 - +0.3
236,472 - -0.9
236,474 + -0.9
236,474 + -1.9
236,483 + QEN71_RS43785 0.11 -0.6
236,483 + QEN71_RS43785 0.11 +0.2
236,484 - QEN71_RS43785 0.11 +0.1
236,484 - QEN71_RS43785 0.11 +0.7
236,484 - QEN71_RS43785 0.11 -0.2
236,484 - QEN71_RS43785 0.11 +0.3
236,581 + QEN71_RS43785 0.32 +0.1
236,582 - QEN71_RS43785 0.32 +0.4
236,582 - QEN71_RS43785 0.32 +0.3
236,675 + QEN71_RS43785 0.52 +0.1
236,676 - QEN71_RS43785 0.52 +1.2
236,676 - QEN71_RS43785 0.52 -0.5
236,688 + QEN71_RS43785 0.55 -0.4
236,688 + QEN71_RS43785 0.55 +1.3
236,688 + QEN71_RS43785 0.55 +0.2
236,689 - QEN71_RS43785 0.55 -0.1
236,689 - QEN71_RS43785 0.55 +0.2
236,689 - QEN71_RS43785 0.55 -0.8
236,689 - QEN71_RS43785 0.55 +0.9
236,689 - QEN71_RS43785 0.55 +1.4
236,689 - QEN71_RS43785 0.55 -1.6
236,869 - -0.2
236,869 - +0.2
236,869 - +0.6
236,960 + QEN71_RS43790 0.17 -0.4
236,961 - QEN71_RS43790 0.17 +0.1
236,996 + QEN71_RS43790 0.26 -0.7
236,996 + QEN71_RS43790 0.26 -0.1
236,996 + QEN71_RS43790 0.26 +1.4
236,996 + QEN71_RS43790 0.26 +1.4
236,997 - QEN71_RS43790 0.26 -1.1
236,997 - QEN71_RS43790 0.26 -0.4
236,997 - QEN71_RS43790 0.26 -0.8
236,997 - QEN71_RS43790 0.26 -0.5
237,024 + QEN71_RS43790 0.33 -0.5
237,025 - QEN71_RS43790 0.34 -0.4
237,099 + QEN71_RS43790 0.52 -0.1
237,099 + QEN71_RS43790 0.52 -1.0
237,099 + QEN71_RS43790 0.52 -0.6
237,100 - QEN71_RS43790 0.53 +0.0
237,100 - QEN71_RS43790 0.53 -0.7
237,100 - QEN71_RS43790 0.53 -1.3
237,100 - QEN71_RS43790 0.53 +0.7
237,100 - QEN71_RS43790 0.53 -1.7
237,106 - QEN71_RS43790 0.54 +2.0
237,106 - QEN71_RS43790 0.54 +0.5
237,264 - +0.1
237,264 - -1.0
237,408 + -0.8
237,409 - +0.3
237,576 + QEN71_RS43795 0.45 -0.6
237,576 + QEN71_RS43795 0.45 +0.7
237,747 + QEN71_RS43795 0.82 +0.2
237,747 + QEN71_RS43795 0.82 -0.2
237,748 - QEN71_RS43795 0.82 -0.9
237,748 - QEN71_RS43795 0.82 -1.1
237,748 - QEN71_RS43795 0.82 -0.6
237,748 - QEN71_RS43795 0.82 +0.0
237,748 - QEN71_RS43795 0.82 -0.5
237,748 - QEN71_RS43795 0.82 +1.5
237,775 + QEN71_RS43795 0.88 +0.0
237,775 + QEN71_RS43795 0.88 -0.2
237,815 - -0.6
237,815 - +1.7
237,815 - -0.1
237,957 + QEN71_RS43800 0.30 -0.4
237,957 + QEN71_RS43800 0.30 -0.6
237,958 - QEN71_RS43800 0.30 -0.1
237,958 - QEN71_RS43800 0.30 +0.5
237,958 - QEN71_RS43800 0.30 +0.5
238,072 + QEN71_RS43800 0.65 -0.4
238,072 + QEN71_RS43800 0.65 +0.2
238,072 + QEN71_RS43800 0.65 +0.4
238,073 - QEN71_RS43800 0.65 +0.1
238,073 - QEN71_RS43800 0.65 +0.3
238,073 - QEN71_RS43800 0.65 +1.4
238,073 - QEN71_RS43800 0.65 -2.3
238,073 - QEN71_RS43800 0.65 -0.4
238,144 + QEN71_RS43800 0.87 +0.1
238,144 + QEN71_RS43800 0.87 +0.1
238,144 + QEN71_RS43800 0.87 -0.1
238,144 + QEN71_RS43800 0.87 -0.6
238,144 + QEN71_RS43800 0.87 -0.4
238,144 + QEN71_RS43800 0.87 +1.4
238,145 - QEN71_RS43800 0.88 +0.1
238,145 - QEN71_RS43800 0.88 +0.2
238,145 - QEN71_RS43800 0.88 +0.3
238,145 - QEN71_RS43800 0.88 +0.1
238,145 - QEN71_RS43800 0.88 -1.3
238,145 - QEN71_RS43800 0.88 +2.1
238,339 + -0.9
238,340 - -1.0
238,340 - -0.1
238,340 - +0.8
238,438 + QEN71_RS43805 0.42 +0.4
238,438 + QEN71_RS43805 0.42 -0.2
238,438 + QEN71_RS43805 0.42 +0.6
238,438 + QEN71_RS43805 0.42 +1.2
238,439 - QEN71_RS43805 0.43 -0.5
238,439 - QEN71_RS43805 0.43 +1.5
238,586 + -0.2
238,586 + -0.3
238,587 - +0.4
238,657 + -0.3
238,657 + +1.5
238,657 + -0.4
238,657 + +1.6
238,657 + -0.9
238,658 - -0.3
238,658 - -0.1
238,658 - -1.2
238,658 - +0.1
238,658 - -1.5
238,722 - -2.1
238,722 - -0.4
238,722 - +0.2
238,759 + -0.1
238,772 + +0.2
238,772 + +0.0
238,772 + +0.9
238,772 + +0.0
238,772 + -1.0
238,772 + -0.6
238,773 - +1.4
238,773 - -0.8
238,773 - -0.0
238,773 - +0.3

Or see this region's nucleotide sequence