Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43775 and QEN71_RS43780 are separated by 97 nucleotides QEN71_RS43780 and QEN71_RS43785 are separated by 233 nucleotides QEN71_RS43785 and QEN71_RS43790 overlap by 4 nucleotides QEN71_RS43790 and QEN71_RS43795 are separated by 82 nucleotides QEN71_RS43795 and QEN71_RS43800 are separated by 31 nucleotides
QEN71_RS43775: QEN71_RS43775 - hypothetical protein, at 234,311 to 235,642
_RS43775
QEN71_RS43780: QEN71_RS43780 - hypothetical protein, at 235,740 to 236,198
_RS43780
QEN71_RS43785: QEN71_RS43785 - hypothetical protein, at 236,432 to 236,896
_RS43785
QEN71_RS43790: QEN71_RS43790 - hypothetical protein, at 236,893 to 237,285
_RS43790
QEN71_RS43795: QEN71_RS43795 - hypothetical protein, at 237,368 to 237,829
_RS43795
QEN71_RS43800: QEN71_RS43800 - hypothetical protein, at 237,861 to 238,184
_RS43800
Position (kb) 236
237 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 235.491 kb on + strand, within QEN71_RS43775 at 235.491 kb on + strand, within QEN71_RS43775 at 235.492 kb on - strand, within QEN71_RS43775 at 235.492 kb on - strand, within QEN71_RS43775 at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.638 kb on + strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.639 kb on - strand at 235.703 kb on + strand at 235.742 kb on - strand at 235.815 kb on + strand, within QEN71_RS43780 at 235.815 kb on + strand, within QEN71_RS43780 at 235.816 kb on - strand, within QEN71_RS43780 at 235.834 kb on + strand, within QEN71_RS43780 at 235.872 kb on + strand, within QEN71_RS43780 at 235.873 kb on - strand, within QEN71_RS43780 at 235.873 kb on - strand, within QEN71_RS43780 at 235.873 kb on - strand, within QEN71_RS43780 at 235.941 kb on + strand, within QEN71_RS43780 at 235.941 kb on + strand, within QEN71_RS43780 at 235.942 kb on - strand, within QEN71_RS43780 at 235.942 kb on - strand, within QEN71_RS43780 at 235.942 kb on - strand, within QEN71_RS43780 at 236.050 kb on + strand, within QEN71_RS43780 at 236.050 kb on + strand, within QEN71_RS43780 at 236.051 kb on - strand, within QEN71_RS43780 at 236.051 kb on - strand, within QEN71_RS43780 at 236.051 kb on - strand, within QEN71_RS43780 at 236.176 kb on - strand at 236.214 kb on + strand at 236.214 kb on + strand at 236.215 kb on - strand at 236.249 kb on + strand at 236.270 kb on + strand at 236.270 kb on + strand at 236.271 kb on - strand at 236.271 kb on - strand at 236.271 kb on - strand at 236.271 kb on - strand at 236.271 kb on - strand at 236.284 kb on - strand at 236.418 kb on + strand at 236.418 kb on + strand at 236.418 kb on + strand at 236.418 kb on + strand at 236.418 kb on + strand at 236.418 kb on + strand at 236.419 kb on - strand at 236.419 kb on - strand at 236.419 kb on - strand at 236.419 kb on - strand at 236.419 kb on - strand at 236.463 kb on + strand at 236.463 kb on + strand at 236.464 kb on - strand at 236.464 kb on - strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.471 kb on + strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.472 kb on - strand at 236.474 kb on + strand at 236.474 kb on + strand at 236.483 kb on + strand, within QEN71_RS43785 at 236.483 kb on + strand, within QEN71_RS43785 at 236.484 kb on - strand, within QEN71_RS43785 at 236.484 kb on - strand, within QEN71_RS43785 at 236.484 kb on - strand, within QEN71_RS43785 at 236.484 kb on - strand, within QEN71_RS43785 at 236.581 kb on + strand, within QEN71_RS43785 at 236.582 kb on - strand, within QEN71_RS43785 at 236.582 kb on - strand, within QEN71_RS43785 at 236.675 kb on + strand, within QEN71_RS43785 at 236.676 kb on - strand, within QEN71_RS43785 at 236.676 kb on - strand, within QEN71_RS43785 at 236.688 kb on + strand, within QEN71_RS43785 at 236.688 kb on + strand, within QEN71_RS43785 at 236.688 kb on + strand, within QEN71_RS43785 at 236.689 kb on - strand, within QEN71_RS43785 at 236.689 kb on - strand, within QEN71_RS43785 at 236.689 kb on - strand, within QEN71_RS43785 at 236.689 kb on - strand, within QEN71_RS43785 at 236.689 kb on - strand, within QEN71_RS43785 at 236.689 kb on - strand, within QEN71_RS43785 at 236.869 kb on - strand at 236.869 kb on - strand at 236.869 kb on - strand at 236.960 kb on + strand, within QEN71_RS43790 at 236.961 kb on - strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 237.024 kb on + strand, within QEN71_RS43790 at 237.025 kb on - strand, within QEN71_RS43790 at 237.099 kb on + strand, within QEN71_RS43790 at 237.099 kb on + strand, within QEN71_RS43790 at 237.099 kb on + strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.106 kb on - strand, within QEN71_RS43790 at 237.106 kb on - strand, within QEN71_RS43790 at 237.264 kb on - strand at 237.264 kb on - strand at 237.408 kb on + strand at 237.409 kb on - strand at 237.576 kb on + strand, within QEN71_RS43795 at 237.576 kb on + strand, within QEN71_RS43795 at 237.747 kb on + strand, within QEN71_RS43795 at 237.747 kb on + strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.775 kb on + strand, within QEN71_RS43795 at 237.775 kb on + strand, within QEN71_RS43795 at 237.815 kb on - strand at 237.815 kb on - strand at 237.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 235,491 + QEN71_RS43775 0.89 +1.0 235,491 + QEN71_RS43775 0.89 +0.0 235,492 - QEN71_RS43775 0.89 -0.9 235,492 - QEN71_RS43775 0.89 +0.1 235,638 + +0.3 235,638 + -0.0 235,638 + -0.2 235,638 + +0.6 235,638 + -0.7 235,638 + -0.6 235,638 + +0.4 235,638 + +0.5 235,638 + -2.6 235,638 + -0.3 235,638 + -0.6 235,638 + -0.1 235,638 + +0.6 235,638 + +0.7 235,639 - -1.2 235,639 - -0.6 235,639 - -0.5 235,639 - -0.7 235,639 - -0.1 235,639 - +0.3 235,639 - -1.5 235,639 - +0.6 235,639 - +0.0 235,639 - +0.5 235,639 - -0.3 235,639 - +0.5 235,639 - -0.4 235,639 - +0.1 235,703 + -0.2 235,742 - +1.3 235,815 + QEN71_RS43780 0.16 -0.6 235,815 + QEN71_RS43780 0.16 -0.6 235,816 - QEN71_RS43780 0.17 +0.4 235,834 + QEN71_RS43780 0.20 +0.4 235,872 + QEN71_RS43780 0.29 +2.3 235,873 - QEN71_RS43780 0.29 -0.1 235,873 - QEN71_RS43780 0.29 -0.6 235,873 - QEN71_RS43780 0.29 -0.6 235,941 + QEN71_RS43780 0.44 -1.1 235,941 + QEN71_RS43780 0.44 +1.0 235,942 - QEN71_RS43780 0.44 +0.1 235,942 - QEN71_RS43780 0.44 -0.3 235,942 - QEN71_RS43780 0.44 +0.6 236,050 + QEN71_RS43780 0.68 -1.5 236,050 + QEN71_RS43780 0.68 -1.0 236,051 - QEN71_RS43780 0.68 -0.5 236,051 - QEN71_RS43780 0.68 +1.1 236,051 - QEN71_RS43780 0.68 -0.9 236,176 - -0.6 236,214 + +0.6 236,214 + +0.1 236,215 - -0.1 236,249 + -1.5 236,270 + +0.3 236,270 + -4.3 236,271 - -2.1 236,271 - -0.0 236,271 - +0.8 236,271 - +1.0 236,271 - +0.5 236,284 - -0.3 236,418 + +1.2 236,418 + -0.0 236,418 + -1.5 236,418 + +0.7 236,418 + +0.0 236,418 + +0.1 236,419 - +0.3 236,419 - +0.7 236,419 - +1.0 236,419 - -0.1 236,419 - +0.2 236,463 + -0.4 236,463 + -2.0 236,464 - -0.1 236,464 - +0.1 236,471 + +0.1 236,471 + -1.6 236,471 + -0.1 236,471 + +0.6 236,471 + -0.5 236,471 + -1.5 236,471 + -0.9 236,471 + -0.8 236,472 - -0.0 236,472 - -1.9 236,472 - -0.2 236,472 - -0.3 236,472 - +0.1 236,472 - -0.5 236,472 - +0.3 236,472 - -0.9 236,474 + -0.9 236,474 + -1.9 236,483 + QEN71_RS43785 0.11 -0.6 236,483 + QEN71_RS43785 0.11 +0.2 236,484 - QEN71_RS43785 0.11 +0.1 236,484 - QEN71_RS43785 0.11 +0.7 236,484 - QEN71_RS43785 0.11 -0.2 236,484 - QEN71_RS43785 0.11 +0.3 236,581 + QEN71_RS43785 0.32 +0.1 236,582 - QEN71_RS43785 0.32 +0.4 236,582 - QEN71_RS43785 0.32 +0.3 236,675 + QEN71_RS43785 0.52 +0.1 236,676 - QEN71_RS43785 0.52 +1.2 236,676 - QEN71_RS43785 0.52 -0.5 236,688 + QEN71_RS43785 0.55 -0.4 236,688 + QEN71_RS43785 0.55 +1.3 236,688 + QEN71_RS43785 0.55 +0.2 236,689 - QEN71_RS43785 0.55 -0.1 236,689 - QEN71_RS43785 0.55 +0.2 236,689 - QEN71_RS43785 0.55 -0.8 236,689 - QEN71_RS43785 0.55 +0.9 236,689 - QEN71_RS43785 0.55 +1.4 236,689 - QEN71_RS43785 0.55 -1.6 236,869 - -0.2 236,869 - +0.2 236,869 - +0.6 236,960 + QEN71_RS43790 0.17 -0.4 236,961 - QEN71_RS43790 0.17 +0.1 236,996 + QEN71_RS43790 0.26 -0.7 236,996 + QEN71_RS43790 0.26 -0.1 236,996 + QEN71_RS43790 0.26 +1.4 236,996 + QEN71_RS43790 0.26 +1.4 236,997 - QEN71_RS43790 0.26 -1.1 236,997 - QEN71_RS43790 0.26 -0.4 236,997 - QEN71_RS43790 0.26 -0.8 236,997 - QEN71_RS43790 0.26 -0.5 237,024 + QEN71_RS43790 0.33 -0.5 237,025 - QEN71_RS43790 0.34 -0.4 237,099 + QEN71_RS43790 0.52 -0.1 237,099 + QEN71_RS43790 0.52 -1.0 237,099 + QEN71_RS43790 0.52 -0.6 237,100 - QEN71_RS43790 0.53 +0.0 237,100 - QEN71_RS43790 0.53 -0.7 237,100 - QEN71_RS43790 0.53 -1.3 237,100 - QEN71_RS43790 0.53 +0.7 237,100 - QEN71_RS43790 0.53 -1.7 237,106 - QEN71_RS43790 0.54 +2.0 237,106 - QEN71_RS43790 0.54 +0.5 237,264 - +0.1 237,264 - -1.0 237,408 + -0.8 237,409 - +0.3 237,576 + QEN71_RS43795 0.45 -0.6 237,576 + QEN71_RS43795 0.45 +0.7 237,747 + QEN71_RS43795 0.82 +0.2 237,747 + QEN71_RS43795 0.82 -0.2 237,748 - QEN71_RS43795 0.82 -0.9 237,748 - QEN71_RS43795 0.82 -1.1 237,748 - QEN71_RS43795 0.82 -0.6 237,748 - QEN71_RS43795 0.82 +0.0 237,748 - QEN71_RS43795 0.82 -0.5 237,748 - QEN71_RS43795 0.82 +1.5 237,775 + QEN71_RS43795 0.88 +0.0 237,775 + QEN71_RS43795 0.88 -0.2 237,815 - -0.6 237,815 - +1.7 237,815 - -0.1
Or see this region's nucleotide sequence