Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43420 and QEN71_RS43425 are separated by 65 nucleotides QEN71_RS43425 and QEN71_RS43430 are separated by 484 nucleotides QEN71_RS43430 and QEN71_RS43435 are separated by 161 nucleotides QEN71_RS43435 and QEN71_RS43440 are separated by 49 nucleotides QEN71_RS43440 and QEN71_RS43445 are separated by 32 nucleotides
QEN71_RS43420: QEN71_RS43420 - IS21 family transposase, at 175,854 to 176,900
_RS43420
QEN71_RS43425: QEN71_RS43425 - hypothetical protein, at 176,966 to 177,199
_RS43425
QEN71_RS43430: QEN71_RS43430 - hypothetical protein, at 177,684 to 178,079
_RS43430
QEN71_RS43435: QEN71_RS43435 - hypothetical protein, at 178,241 to 178,606
_RS43435
QEN71_RS43440: QEN71_RS43440 - hypothetical protein, at 178,656 to 178,892
_RS43440
QEN71_RS43445: QEN71_RS43445 - hypothetical protein, at 178,925 to 179,416
_RS43445
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 177.054 kb on + strand, within QEN71_RS43425 at 177.054 kb on + strand, within QEN71_RS43425 at 177.055 kb on - strand, within QEN71_RS43425 at 177.055 kb on - strand, within QEN71_RS43425 at 177.176 kb on + strand at 177.176 kb on + strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.232 kb on + strand at 177.233 kb on - strand at 177.233 kb on - strand at 177.233 kb on - strand at 177.249 kb on + strand at 177.249 kb on + strand at 177.250 kb on - strand at 177.250 kb on - strand at 177.250 kb on - strand at 177.250 kb on - strand at 177.256 kb on + strand at 177.257 kb on - strand at 177.257 kb on - strand at 177.269 kb on - strand at 177.285 kb on + strand at 177.285 kb on + strand at 177.285 kb on + strand at 177.345 kb on + strand at 177.345 kb on + strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.346 kb on - strand at 177.353 kb on + strand at 177.459 kb on + strand at 177.459 kb on + strand at 177.460 kb on - strand at 177.466 kb on + strand at 177.466 kb on + strand at 177.466 kb on + strand at 177.467 kb on - strand at 177.489 kb on + strand at 177.490 kb on - strand at 177.490 kb on - strand at 177.729 kb on + strand, within QEN71_RS43430 at 177.730 kb on - strand, within QEN71_RS43430 at 177.784 kb on + strand, within QEN71_RS43430 at 177.784 kb on + strand, within QEN71_RS43430 at 177.809 kb on + strand, within QEN71_RS43430 at 177.863 kb on - strand, within QEN71_RS43430 at 177.868 kb on - strand, within QEN71_RS43430 at 177.931 kb on + strand, within QEN71_RS43430 at 177.932 kb on - strand, within QEN71_RS43430 at 177.932 kb on - strand, within QEN71_RS43430 at 177.932 kb on - strand, within QEN71_RS43430 at 177.932 kb on - strand, within QEN71_RS43430 at 177.932 kb on - strand, within QEN71_RS43430 at 177.956 kb on - strand, within QEN71_RS43430 at 177.956 kb on - strand, within QEN71_RS43430 at 177.956 kb on - strand, within QEN71_RS43430 at 178.021 kb on + strand, within QEN71_RS43430 at 178.021 kb on + strand, within QEN71_RS43430 at 178.021 kb on + strand, within QEN71_RS43430 at 178.022 kb on - strand, within QEN71_RS43430 at 178.022 kb on - strand, within QEN71_RS43430 at 178.022 kb on - strand, within QEN71_RS43430 at 178.072 kb on - strand at 178.072 kb on - strand at 178.110 kb on + strand at 178.110 kb on + strand at 178.110 kb on + strand at 178.110 kb on + strand at 178.110 kb on + strand at 178.111 kb on - strand at 178.111 kb on - strand at 178.111 kb on - strand at 178.111 kb on - strand at 178.112 kb on + strand at 178.112 kb on + strand at 178.112 kb on + strand at 178.113 kb on - strand at 178.113 kb on - strand at 178.122 kb on - strand at 178.122 kb on - strand at 178.154 kb on + strand at 178.267 kb on + strand at 178.267 kb on + strand at 178.267 kb on + strand at 178.444 kb on + strand, within QEN71_RS43435 at 178.444 kb on + strand, within QEN71_RS43435 at 178.445 kb on - strand, within QEN71_RS43435 at 178.461 kb on + strand, within QEN71_RS43435 at 178.461 kb on + strand, within QEN71_RS43435 at 178.461 kb on + strand, within QEN71_RS43435 at 178.462 kb on - strand, within QEN71_RS43435 at 178.591 kb on - strand at 178.606 kb on + strand at 178.606 kb on + strand at 178.640 kb on + strand at 178.641 kb on - strand at 178.641 kb on - strand at 178.696 kb on + strand, within QEN71_RS43440 at 178.741 kb on - strand, within QEN71_RS43440 at 178.747 kb on - strand, within QEN71_RS43440 at 178.799 kb on - strand, within QEN71_RS43440 at 178.799 kb on - strand, within QEN71_RS43440 at 178.799 kb on - strand, within QEN71_RS43440 at 178.802 kb on - strand, within QEN71_RS43440 at 178.802 kb on - strand, within QEN71_RS43440 at 178.868 kb on - strand, within QEN71_RS43440 at 179.045 kb on + strand, within QEN71_RS43445 at 179.046 kb on - strand, within QEN71_RS43445 at 179.046 kb on - strand, within QEN71_RS43445 at 179.046 kb on - strand, within QEN71_RS43445 at 179.049 kb on + strand, within QEN71_RS43445 at 179.049 kb on + strand, within QEN71_RS43445 at 179.049 kb on + strand, within QEN71_RS43445 at 179.050 kb on - strand, within QEN71_RS43445 at 179.050 kb on - strand, within QEN71_RS43445 at 179.050 kb on - strand, within QEN71_RS43445 at 179.050 kb on - strand, within QEN71_RS43445
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 177,054 + QEN71_RS43425 0.38 -0.9 177,054 + QEN71_RS43425 0.38 -0.9 177,055 - QEN71_RS43425 0.38 +0.0 177,055 - QEN71_RS43425 0.38 -0.7 177,176 + -0.2 177,176 + -1.1 177,177 - -0.6 177,177 - +0.7 177,177 - +0.1 177,177 - -0.4 177,232 + +0.4 177,233 - +0.2 177,233 - -0.8 177,233 - +1.7 177,249 + -0.8 177,249 + +1.3 177,250 - +0.7 177,250 - -0.1 177,250 - -0.8 177,250 - -0.3 177,256 + -1.6 177,257 - -0.7 177,257 - -1.6 177,269 - +0.1 177,285 + +0.9 177,285 + -1.1 177,285 + -1.6 177,345 + +1.3 177,345 + -0.4 177,346 - -0.1 177,346 - -0.9 177,346 - +0.0 177,346 - +1.1 177,346 - -0.2 177,346 - +0.6 177,346 - +0.1 177,346 - +0.3 177,346 - +0.2 177,346 - +0.2 177,353 + -0.2 177,459 + +1.6 177,459 + +0.1 177,460 - +0.2 177,466 + -0.3 177,466 + +0.4 177,466 + +0.2 177,467 - +0.0 177,489 + -0.8 177,490 - -2.0 177,490 - +0.6 177,729 + QEN71_RS43430 0.11 -0.7 177,730 - QEN71_RS43430 0.12 -0.1 177,784 + QEN71_RS43430 0.25 -0.2 177,784 + QEN71_RS43430 0.25 -0.3 177,809 + QEN71_RS43430 0.32 -0.9 177,863 - QEN71_RS43430 0.45 +0.1 177,868 - QEN71_RS43430 0.46 -0.2 177,931 + QEN71_RS43430 0.62 -0.4 177,932 - QEN71_RS43430 0.63 +0.8 177,932 - QEN71_RS43430 0.63 +0.7 177,932 - QEN71_RS43430 0.63 -0.6 177,932 - QEN71_RS43430 0.63 -0.0 177,932 - QEN71_RS43430 0.63 -0.5 177,956 - QEN71_RS43430 0.69 +0.2 177,956 - QEN71_RS43430 0.69 +1.1 177,956 - QEN71_RS43430 0.69 +0.4 178,021 + QEN71_RS43430 0.85 -1.2 178,021 + QEN71_RS43430 0.85 -0.1 178,021 + QEN71_RS43430 0.85 -1.2 178,022 - QEN71_RS43430 0.85 +0.5 178,022 - QEN71_RS43430 0.85 +0.3 178,022 - QEN71_RS43430 0.85 -1.4 178,072 - -0.1 178,072 - +0.1 178,110 + +0.2 178,110 + -0.5 178,110 + +0.2 178,110 + +0.7 178,110 + -0.3 178,111 - -0.3 178,111 - +0.2 178,111 - +1.2 178,111 - -0.9 178,112 + -0.5 178,112 + -0.0 178,112 + -0.3 178,113 - -1.5 178,113 - -1.1 178,122 - -0.2 178,122 - -0.4 178,154 + +0.3 178,267 + -0.2 178,267 + +0.1 178,267 + -0.9 178,444 + QEN71_RS43435 0.55 +0.9 178,444 + QEN71_RS43435 0.55 -0.1 178,445 - QEN71_RS43435 0.56 +1.5 178,461 + QEN71_RS43435 0.60 -0.6 178,461 + QEN71_RS43435 0.60 -0.4 178,461 + QEN71_RS43435 0.60 -0.1 178,462 - QEN71_RS43435 0.60 +0.0 178,591 - -0.1 178,606 + +0.1 178,606 + +0.6 178,640 + +1.7 178,641 - -2.4 178,641 - -1.1 178,696 + QEN71_RS43440 0.17 -0.6 178,741 - QEN71_RS43440 0.36 +0.6 178,747 - QEN71_RS43440 0.38 +0.3 178,799 - QEN71_RS43440 0.60 +0.7 178,799 - QEN71_RS43440 0.60 -0.3 178,799 - QEN71_RS43440 0.60 -0.3 178,802 - QEN71_RS43440 0.62 +0.3 178,802 - QEN71_RS43440 0.62 -1.5 178,868 - QEN71_RS43440 0.89 -0.3 179,045 + QEN71_RS43445 0.24 +0.5 179,046 - QEN71_RS43445 0.25 +0.5 179,046 - QEN71_RS43445 0.25 -0.0 179,046 - QEN71_RS43445 0.25 -0.1 179,049 + QEN71_RS43445 0.25 -0.1 179,049 + QEN71_RS43445 0.25 -0.3 179,049 + QEN71_RS43445 0.25 +0.6 179,050 - QEN71_RS43445 0.25 +0.6 179,050 - QEN71_RS43445 0.25 -0.3 179,050 - QEN71_RS43445 0.25 -1.0 179,050 - QEN71_RS43445 0.25 +0.1
Or see this region's nucleotide sequence