Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37865

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37855 and QEN71_RS37860 are separated by 187 nucleotidesQEN71_RS37860 and QEN71_RS37865 are separated by 138 nucleotidesQEN71_RS37865 and QEN71_RS37870 are separated by 103 nucleotides QEN71_RS37855: QEN71_RS37855 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,862,723 to 1,863,589 _RS37855 QEN71_RS37860: QEN71_RS37860 - hypothetical protein, at 1,863,777 to 1,864,208 _RS37860 QEN71_RS37865: QEN71_RS37865 - carbonic anhydrase, at 1,864,347 to 1,864,889 _RS37865 QEN71_RS37870: QEN71_RS37870 - nitrilase-related carbon-nitrogen hydrolase, at 1,864,993 to 1,865,976 _RS37870 Position (kb) 1864 1865Strain fitness (log2 ratio) -1 0 1 2at 1863.522 kb on - strandat 1863.653 kb on + strandat 1863.742 kb on + strandat 1863.743 kb on - strandat 1863.744 kb on + strandat 1863.744 kb on + strandat 1863.744 kb on + strandat 1863.744 kb on + strandat 1863.745 kb on - strandat 1863.745 kb on - strandat 1863.915 kb on + strand, within QEN71_RS37860at 1863.916 kb on - strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.044 kb on + strand, within QEN71_RS37860at 1864.045 kb on - strand, within QEN71_RS37860at 1864.045 kb on - strand, within QEN71_RS37860at 1864.221 kb on + strandat 1864.415 kb on - strand, within QEN71_RS37865at 1864.415 kb on - strand, within QEN71_RS37865at 1864.495 kb on + strand, within QEN71_RS37865at 1864.496 kb on - strand, within QEN71_RS37865at 1864.841 kb on + strandat 1864.872 kb on + strandat 1864.873 kb on - strandat 1864.873 kb on - strandat 1864.873 kb on - strandat 1864.937 kb on + strandat 1864.937 kb on + strandat 1864.937 kb on + strandat 1864.938 kb on - strandat 1865.108 kb on + strand, within QEN71_RS37870at 1865.108 kb on + strand, within QEN71_RS37870at 1865.108 kb on + strand, within QEN71_RS37870at 1865.483 kb on + strand, within QEN71_RS37870at 1865.484 kb on - strand, within QEN71_RS37870at 1865.484 kb on - strand, within QEN71_RS37870at 1865.484 kb on - strand, within QEN71_RS37870at 1865.582 kb on + strand, within QEN71_RS37870at 1865.651 kb on + strand, within QEN71_RS37870at 1865.651 kb on + strand, within QEN71_RS37870at 1865.774 kb on + strand, within QEN71_RS37870at 1865.774 kb on + strand, within QEN71_RS37870at 1865.774 kb on + strand, within QEN71_RS37870at 1865.774 kb on + strand, within QEN71_RS37870at 1865.819 kb on + strand, within QEN71_RS37870

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,863,522 - -0.8
1,863,653 + -0.2
1,863,742 + -0.7
1,863,743 - +0.5
1,863,744 + -0.4
1,863,744 + -0.2
1,863,744 + -1.2
1,863,744 + -0.4
1,863,745 - -0.5
1,863,745 - -0.6
1,863,915 + QEN71_RS37860 0.32 +0.4
1,863,916 - QEN71_RS37860 0.32 +2.3
1,864,044 + QEN71_RS37860 0.62 +1.1
1,864,044 + QEN71_RS37860 0.62 +1.1
1,864,044 + QEN71_RS37860 0.62 -0.5
1,864,044 + QEN71_RS37860 0.62 +0.1
1,864,044 + QEN71_RS37860 0.62 +0.5
1,864,044 + QEN71_RS37860 0.62 -0.2
1,864,044 + QEN71_RS37860 0.62 +0.6
1,864,045 - QEN71_RS37860 0.62 -0.3
1,864,045 - QEN71_RS37860 0.62 +1.1
1,864,221 + -0.2
1,864,415 - QEN71_RS37865 0.13 +0.6
1,864,415 - QEN71_RS37865 0.13 -0.9
1,864,495 + QEN71_RS37865 0.27 +0.2
1,864,496 - QEN71_RS37865 0.27 +1.2
1,864,841 + -0.2
1,864,872 + +0.1
1,864,873 - -0.2
1,864,873 - -0.4
1,864,873 - +0.0
1,864,937 + -0.2
1,864,937 + -0.8
1,864,937 + -0.8
1,864,938 - -0.2
1,865,108 + QEN71_RS37870 0.12 +0.3
1,865,108 + QEN71_RS37870 0.12 -0.7
1,865,108 + QEN71_RS37870 0.12 +0.0
1,865,483 + QEN71_RS37870 0.50 +0.5
1,865,484 - QEN71_RS37870 0.50 -0.4
1,865,484 - QEN71_RS37870 0.50 -0.4
1,865,484 - QEN71_RS37870 0.50 -0.2
1,865,582 + QEN71_RS37870 0.60 -0.1
1,865,651 + QEN71_RS37870 0.67 -0.6
1,865,651 + QEN71_RS37870 0.67 -0.6
1,865,774 + QEN71_RS37870 0.79 +0.5
1,865,774 + QEN71_RS37870 0.79 -0.2
1,865,774 + QEN71_RS37870 0.79 -0.6
1,865,774 + QEN71_RS37870 0.79 -0.2
1,865,819 + QEN71_RS37870 0.84 -0.6

Or see this region's nucleotide sequence