Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18240

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS18230 and QEN71_RS18235 are separated by 2 nucleotidesQEN71_RS18235 and QEN71_RS18240 are separated by 13 nucleotidesQEN71_RS18240 and QEN71_RS18245 are separated by 20 nucleotidesQEN71_RS18245 and QEN71_RS18250 are separated by 26 nucleotides QEN71_RS18230: QEN71_RS18230 - pyridoxamine 5'-phosphate oxidase family protein, at 4,054,573 to 4,056,609 _RS18230 QEN71_RS18235: QEN71_RS18235 - hypothetical protein, at 4,056,612 to 4,056,962 _RS18235 QEN71_RS18240: QEN71_RS18240 - RNA polymerase sigma factor, at 4,056,976 to 4,057,695 _RS18240 QEN71_RS18245: QEN71_RS18245 - cupredoxin family copper-binding protein, at 4,057,716 to 4,058,030 _RS18245 QEN71_RS18250: QEN71_RS18250 - DUF4142 domain-containing protein, at 4,058,057 to 4,058,596 _RS18250 Position (kb) 4056 4057 4058Strain fitness (log2 ratio) -2 -1 0 1 2at 4055.980 kb on - strand, within QEN71_RS18230at 4055.996 kb on - strand, within QEN71_RS18230at 4056.067 kb on + strand, within QEN71_RS18230at 4056.069 kb on + strand, within QEN71_RS18230at 4056.069 kb on + strand, within QEN71_RS18230at 4056.070 kb on - strand, within QEN71_RS18230at 4056.070 kb on - strand, within QEN71_RS18230at 4056.091 kb on + strand, within QEN71_RS18230at 4056.092 kb on - strand, within QEN71_RS18230at 4056.092 kb on - strand, within QEN71_RS18230at 4056.178 kb on + strand, within QEN71_RS18230at 4056.179 kb on - strand, within QEN71_RS18230at 4056.224 kb on - strand, within QEN71_RS18230at 4056.613 kb on + strandat 4056.613 kb on + strandat 4056.613 kb on + strandat 4056.613 kb on + strandat 4056.614 kb on - strandat 4056.648 kb on + strand, within QEN71_RS18235at 4056.648 kb on + strand, within QEN71_RS18235at 4056.783 kb on - strand, within QEN71_RS18235at 4056.785 kb on - strand, within QEN71_RS18235at 4056.785 kb on - strand, within QEN71_RS18235at 4056.865 kb on + strand, within QEN71_RS18235at 4056.865 kb on + strand, within QEN71_RS18235at 4056.865 kb on + strand, within QEN71_RS18235at 4056.866 kb on - strand, within QEN71_RS18235at 4056.866 kb on - strand, within QEN71_RS18235at 4056.886 kb on - strand, within QEN71_RS18235at 4056.977 kb on + strandat 4056.977 kb on + strandat 4056.978 kb on - strandat 4057.138 kb on + strand, within QEN71_RS18240at 4057.139 kb on - strand, within QEN71_RS18240at 4057.289 kb on + strand, within QEN71_RS18240at 4057.476 kb on - strand, within QEN71_RS18240at 4057.476 kb on - strand, within QEN71_RS18240at 4057.487 kb on + strand, within QEN71_RS18240at 4057.487 kb on + strand, within QEN71_RS18240at 4057.550 kb on + strand, within QEN71_RS18240at 4057.732 kb on - strandat 4057.774 kb on + strand, within QEN71_RS18245at 4057.778 kb on + strand, within QEN71_RS18245at 4057.778 kb on + strand, within QEN71_RS18245at 4057.778 kb on + strand, within QEN71_RS18245at 4057.778 kb on + strand, within QEN71_RS18245at 4057.778 kb on + strand, within QEN71_RS18245at 4057.778 kb on + strand, within QEN71_RS18245at 4057.779 kb on - strand, within QEN71_RS18245at 4057.779 kb on - strand, within QEN71_RS18245at 4057.978 kb on + strand, within QEN71_RS18245at 4057.978 kb on + strand, within QEN71_RS18245at 4057.979 kb on - strand, within QEN71_RS18245at 4057.979 kb on - strand, within QEN71_RS18245at 4058.211 kb on + strand, within QEN71_RS18250at 4058.212 kb on - strand, within QEN71_RS18250at 4058.300 kb on + strand, within QEN71_RS18250at 4058.300 kb on + strand, within QEN71_RS18250at 4058.301 kb on - strand, within QEN71_RS18250at 4058.638 kb on - strandat 4058.672 kb on + strandat 4058.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,055,980 - QEN71_RS18230 0.69 -0.2
4,055,996 - QEN71_RS18230 0.70 +0.5
4,056,067 + QEN71_RS18230 0.73 -0.7
4,056,069 + QEN71_RS18230 0.73 -0.8
4,056,069 + QEN71_RS18230 0.73 +0.0
4,056,070 - QEN71_RS18230 0.73 +1.3
4,056,070 - QEN71_RS18230 0.73 +0.0
4,056,091 + QEN71_RS18230 0.75 +0.5
4,056,092 - QEN71_RS18230 0.75 +0.2
4,056,092 - QEN71_RS18230 0.75 -1.3
4,056,178 + QEN71_RS18230 0.79 -0.3
4,056,179 - QEN71_RS18230 0.79 +2.1
4,056,224 - QEN71_RS18230 0.81 -0.7
4,056,613 + +0.0
4,056,613 + -0.3
4,056,613 + -0.4
4,056,613 + -0.8
4,056,614 - -0.0
4,056,648 + QEN71_RS18235 0.10 +0.4
4,056,648 + QEN71_RS18235 0.10 -0.6
4,056,783 - QEN71_RS18235 0.49 -2.0
4,056,785 - QEN71_RS18235 0.49 -0.6
4,056,785 - QEN71_RS18235 0.49 -0.6
4,056,865 + QEN71_RS18235 0.72 +1.8
4,056,865 + QEN71_RS18235 0.72 +0.3
4,056,865 + QEN71_RS18235 0.72 -0.4
4,056,866 - QEN71_RS18235 0.72 -0.5
4,056,866 - QEN71_RS18235 0.72 +1.0
4,056,886 - QEN71_RS18235 0.78 -0.0
4,056,977 + +0.7
4,056,977 + +0.2
4,056,978 - +1.5
4,057,138 + QEN71_RS18240 0.23 +0.1
4,057,139 - QEN71_RS18240 0.23 -1.3
4,057,289 + QEN71_RS18240 0.43 +0.4
4,057,476 - QEN71_RS18240 0.69 -1.7
4,057,476 - QEN71_RS18240 0.69 +0.7
4,057,487 + QEN71_RS18240 0.71 +0.2
4,057,487 + QEN71_RS18240 0.71 -0.0
4,057,550 + QEN71_RS18240 0.80 +0.6
4,057,732 - -1.2
4,057,774 + QEN71_RS18245 0.18 +1.2
4,057,778 + QEN71_RS18245 0.20 +0.8
4,057,778 + QEN71_RS18245 0.20 -0.8
4,057,778 + QEN71_RS18245 0.20 -0.7
4,057,778 + QEN71_RS18245 0.20 -0.4
4,057,778 + QEN71_RS18245 0.20 +0.4
4,057,778 + QEN71_RS18245 0.20 -1.0
4,057,779 - QEN71_RS18245 0.20 +0.9
4,057,779 - QEN71_RS18245 0.20 +0.2
4,057,978 + QEN71_RS18245 0.83 +0.8
4,057,978 + QEN71_RS18245 0.83 +0.6
4,057,979 - QEN71_RS18245 0.83 -0.1
4,057,979 - QEN71_RS18245 0.83 +0.5
4,058,211 + QEN71_RS18250 0.29 +1.5
4,058,212 - QEN71_RS18250 0.29 +0.6
4,058,300 + QEN71_RS18250 0.45 +1.5
4,058,300 + QEN71_RS18250 0.45 +1.4
4,058,301 - QEN71_RS18250 0.45 +0.6
4,058,638 - +0.0
4,058,672 + +0.2
4,058,673 - -0.0

Or see this region's nucleotide sequence