Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04102

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
4,603,309	+		MIT1002_04101	0.29	-1.8
4,603,316	+		MIT1002_04101	0.30	-1.3
4,603,385	+		MIT1002_04101	0.35	-1.5
4,603,449	+		MIT1002_04101	0.40	-0.7
4,603,534	+		MIT1002_04101	0.46	-1.1
4,603,534	+		MIT1002_04101	0.46	-1.4
4,603,540	+		MIT1002_04101	0.46	-0.8
4,603,542	-		MIT1002_04101	0.47	-0.2
4,603,587	+		MIT1002_04101	0.50	-0.0
4,603,595	-		MIT1002_04101	0.51	-0.9
4,603,595	-		MIT1002_04101	0.51	+0.4
4,603,595	-		MIT1002_04101	0.51	-0.7
4,603,595	-		MIT1002_04101	0.51	-1.9
4,603,642	-		MIT1002_04101	0.54	-0.1
4,603,675	+		MIT1002_04101	0.57	-0.3
4,603,695	+		MIT1002_04101	0.58	-1.2
4,603,695	-		MIT1002_04101	0.58	-0.8
4,603,756	-		MIT1002_04101	0.63	-0.2
4,603,771	+		MIT1002_04101	0.64	-0.1
4,603,820	+		MIT1002_04101	0.67	-0.4
4,603,846	-		MIT1002_04101	0.69	-0.4
4,603,886	-		MIT1002_04101	0.72	-0.7
4,604,038	-		MIT1002_04101	0.84	+0.2
4,604,171	+				-2.9
4,604,203	+				-0.9
4,604,203	+				-0.8
4,604,251	+				-0.3
4,604,342	-				+0.2
4,604,371	+				+0.2
4,604,391	+				+0.1
4,604,411	-				-0.2
4,604,560	-		MIT1002_04102	0.18	+0.4
4,604,604	-		MIT1002_04102	0.21	+0.2
4,604,606	+		MIT1002_04102	0.21	+0.5
4,604,614	-		MIT1002_04102	0.21	-1.3
4,604,616	+		MIT1002_04102	0.21	+0.3
4,604,624	-		MIT1002_04102	0.22	+0.3
4,604,636	-		MIT1002_04102	0.23	+1.8
4,604,658	+		MIT1002_04102	0.24	-0.5
4,604,663	+		MIT1002_04102	0.24	+0.4
4,604,663	+		MIT1002_04102	0.24	+1.8
4,604,671	-		MIT1002_04102	0.25	+0.8
4,604,706	-		MIT1002_04102	0.27	+0.6
4,604,802	-		MIT1002_04102	0.33	+1.1
4,604,860	-		MIT1002_04102	0.37	+2.2
4,604,897	-		MIT1002_04102	0.39	-0.5
4,604,922	+		MIT1002_04102	0.40	+0.7
4,604,927	+		MIT1002_04102	0.41	+1.7
4,604,927	+		MIT1002_04102	0.41	+1.1
4,604,966	-		MIT1002_04102	0.43	-2.3
4,604,988	+		MIT1002_04102	0.44	-0.6
4,604,996	-		MIT1002_04102	0.45	+1.2
4,604,996	-		MIT1002_04102	0.45	-0.0
4,604,996	-		MIT1002_04102	0.45	-0.2
4,604,996	-		MIT1002_04102	0.45	+0.7
4,604,996	-		MIT1002_04102	0.45	-0.6
4,604,996	-		MIT1002_04102	0.45	+0.8
4,605,074	+		MIT1002_04102	0.50	-0.6
4,605,107	-		MIT1002_04102	0.52	-0.8
4,605,107	-		MIT1002_04102	0.52	+0.3
4,605,109	-		MIT1002_04102	0.52	-0.6
4,605,207	+		MIT1002_04102	0.58	-1.9
4,605,215	-		MIT1002_04102	0.59	-0.5
4,605,261	-		MIT1002_04102	0.61	-0.7
4,605,431	+		MIT1002_04102	0.72	-0.5
4,605,555	+		MIT1002_04102	0.80	+1.2
4,605,571	+		MIT1002_04102	0.81	-0.5
4,605,571	+		MIT1002_04102	0.81	-0.6
4,605,571	+		MIT1002_04102	0.81	+0.1
4,605,579	-		MIT1002_04102	0.81	+0.9
4,605,589	-		MIT1002_04102	0.82	-0.6
4,605,601	+		MIT1002_04102	0.83	-0.4
4,605,601	+		MIT1002_04102	0.83	-1.2
4,605,609	-		MIT1002_04102	0.83	-0.8
4,605,642	+		MIT1002_04102	0.85	-0.1
4,605,728	+				+0.0
4,605,782	+				+0.5
4,605,782	+				+0.9
4,605,782	+				-0.1
4,605,782	+				-0.5
4,605,782	+				-1.4
4,605,782	+				+0.4
4,605,782	+				+0.2
4,605,790	-				+0.2
4,605,790	-				-0.0
4,605,790	-				+0.0
4,605,790	-				-0.4
4,605,790	-				-4.1
4,605,790	-				-1.2
4,605,790	-				+0.2
4,605,790	-				+0.4
4,605,792	+				+0.3
4,605,800	-				+0.0
4,605,836	+				+1.1
4,605,852	-				-0.3
4,605,875	+				-1.0
4,605,936	+				-2.9
4,605,974	+				-0.7
4,606,001	+				-2.3
4,606,019	-				-2.9
4,606,025	-				-2.8
4,606,107	+		MIT1002_04103	0.18	-4.3
4,606,115	-		MIT1002_04103	0.19	-3.9
4,606,122	+		MIT1002_04103	0.20	-1.1
4,606,170	+		MIT1002_04103	0.24	-1.6
4,606,196	+		MIT1002_04103	0.27	-2.3
4,606,214	+		MIT1002_04103	0.29	-3.4
4,606,222	-		MIT1002_04103	0.30	-2.3
4,606,323	+		MIT1002_04103	0.40	-3.0
4,606,374	-		MIT1002_04103	0.45	-1.5
4,606,384	+		MIT1002_04103	0.46	-4.0
4,606,478	-		MIT1002_04103	0.55	-3.6
4,606,499	+		MIT1002_04103	0.57	-2.4
4,606,499	+		MIT1002_04103	0.57	-1.0
4,606,539	-		MIT1002_04103	0.61	-0.9
4,606,541	+		MIT1002_04103	0.61	-4.3
4,606,549	-		MIT1002_04103	0.62	-2.5
4,606,643	+		MIT1002_04103	0.72	-0.2
4,606,643	+		MIT1002_04103	0.72	-1.6
4,606,643	+		MIT1002_04103	0.72	-3.8
4,606,643	+		MIT1002_04103	0.72	-3.8
4,606,643	+		MIT1002_04103	0.72	-2.9
4,606,643	+		MIT1002_04103	0.72	-2.4
4,606,643	+		MIT1002_04103	0.72	-1.0
4,606,651	-		MIT1002_04103	0.72	-2.3
4,606,651	-		MIT1002_04103	0.72	-1.0
4,606,651	-		MIT1002_04103	0.72	-0.2
4,606,651	-		MIT1002_04103	0.72	-1.8
4,606,651	-		MIT1002_04103	0.72	-1.9
4,606,651	-		MIT1002_04103	0.72	-0.9
4,606,651	-		MIT1002_04103	0.72	+0.7
4,606,651	-		MIT1002_04103	0.72	-2.6
4,606,651	-		MIT1002_04103	0.72	+0.1
4,606,651	-		MIT1002_04103	0.72	-3.8
4,606,679	+		MIT1002_04103	0.75	-3.5
4,606,679	+		MIT1002_04103	0.75	-3.1
4,606,827	+				-3.4
4,606,835	-				-1.7
4,606,852	-				-0.6
4,606,855	+				-2.0
4,606,855	+				-2.0
4,606,873	-				-3.3