Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03101

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03099 and MIT1002_03100 are separated by 213 nucleotidesMIT1002_03100 and MIT1002_03101 are separated by 60 nucleotidesMIT1002_03101 and MIT1002_03102 are separated by 107 nucleotides MIT1002_03099: MIT1002_03099 - ribose-5-phosphate isomerase B, at 3,454,733 to 3,455,371 _03099 MIT1002_03100: MIT1002_03100 - hypothetical protein, at 3,455,585 to 3,456,145 _03100 MIT1002_03101: MIT1002_03101 - hypothetical protein, at 3,456,206 to 3,456,862 _03101 MIT1002_03102: MIT1002_03102 - D-cysteine desulfhydrase, at 3,456,970 to 3,457,899 _03102 Position (kb) 3456 3457Strain fitness (log2 ratio) -2 -1 0 1 2at 3455.218 kb on - strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.263 kb on - strand, within MIT1002_03099at 3455.311 kb on + strandat 3455.377 kb on + strandat 3455.413 kb on + strandat 3455.436 kb on + strandat 3455.512 kb on - strandat 3455.590 kb on - strandat 3455.703 kb on - strand, within MIT1002_03100at 3455.712 kb on - strand, within MIT1002_03100at 3455.718 kb on + strand, within MIT1002_03100at 3455.778 kb on + strand, within MIT1002_03100at 3455.833 kb on + strand, within MIT1002_03100at 3455.833 kb on + strand, within MIT1002_03100at 3455.841 kb on - strand, within MIT1002_03100at 3455.841 kb on - strand, within MIT1002_03100at 3455.841 kb on - strand, within MIT1002_03100at 3455.857 kb on + strand, within MIT1002_03100at 3455.899 kb on + strand, within MIT1002_03100at 3455.900 kb on + strand, within MIT1002_03100at 3455.900 kb on + strand, within MIT1002_03100at 3455.908 kb on - strand, within MIT1002_03100at 3455.908 kb on - strand, within MIT1002_03100at 3455.953 kb on - strand, within MIT1002_03100at 3455.953 kb on - strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.981 kb on + strand, within MIT1002_03100at 3455.981 kb on + strand, within MIT1002_03100at 3455.981 kb on + strand, within MIT1002_03100at 3455.989 kb on - strand, within MIT1002_03100at 3456.039 kb on + strand, within MIT1002_03100at 3456.047 kb on + strand, within MIT1002_03100at 3456.181 kb on + strandat 3456.197 kb on + strandat 3456.202 kb on + strandat 3456.292 kb on - strand, within MIT1002_03101at 3456.321 kb on - strand, within MIT1002_03101at 3456.337 kb on + strand, within MIT1002_03101at 3456.341 kb on + strand, within MIT1002_03101at 3456.438 kb on + strand, within MIT1002_03101at 3456.479 kb on - strand, within MIT1002_03101at 3456.516 kb on + strand, within MIT1002_03101at 3456.521 kb on + strand, within MIT1002_03101at 3456.576 kb on + strand, within MIT1002_03101at 3456.584 kb on - strand, within MIT1002_03101at 3456.648 kb on + strand, within MIT1002_03101at 3456.669 kb on - strand, within MIT1002_03101at 3456.713 kb on - strand, within MIT1002_03101at 3456.771 kb on + strand, within MIT1002_03101at 3456.786 kb on + strand, within MIT1002_03101at 3456.822 kb on + strandat 3456.867 kb on - strandat 3456.867 kb on - strandat 3456.872 kb on - strandat 3456.925 kb on + strandat 3456.933 kb on - strandat 3456.954 kb on + strandat 3456.970 kb on + strandat 3457.003 kb on + strandat 3457.011 kb on - strandat 3457.011 kb on - strandat 3457.011 kb on - strandat 3457.011 kb on - strandat 3457.015 kb on + strandat 3457.057 kb on + strandat 3457.127 kb on + strand, within MIT1002_03102at 3457.262 kb on + strand, within MIT1002_03102at 3457.263 kb on - strand, within MIT1002_03102at 3457.309 kb on + strand, within MIT1002_03102at 3457.314 kb on + strand, within MIT1002_03102at 3457.316 kb on + strand, within MIT1002_03102at 3457.319 kb on + strand, within MIT1002_03102at 3457.370 kb on + strand, within MIT1002_03102at 3457.378 kb on - strand, within MIT1002_03102at 3457.447 kb on - strand, within MIT1002_03102at 3457.466 kb on + strand, within MIT1002_03102at 3457.580 kb on - strand, within MIT1002_03102at 3457.580 kb on - strand, within MIT1002_03102at 3457.582 kb on + strand, within MIT1002_03102at 3457.590 kb on - strand, within MIT1002_03102at 3457.598 kb on + strand, within MIT1002_03102at 3457.608 kb on + strand, within MIT1002_03102at 3457.716 kb on - strand, within MIT1002_03102at 3457.795 kb on + strand, within MIT1002_03102at 3457.811 kb on - strandat 3457.813 kb on + strandat 3457.827 kb on + strandat 3457.827 kb on + strandat 3457.827 kb on + strandat 3457.835 kb on - strandat 3457.835 kb on - strandat 3457.861 kb on + strandat 3457.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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3,455,218 - MIT1002_03099 0.76 +0.4
3,455,255 + MIT1002_03099 0.82 -0.8
3,455,255 + MIT1002_03099 0.82 +1.2
3,455,255 + MIT1002_03099 0.82 +2.0
3,455,255 + MIT1002_03099 0.82 -0.3
3,455,263 - MIT1002_03099 0.83 +0.4
3,455,311 + +0.0
3,455,377 + -1.9
3,455,413 + -1.6
3,455,436 + +0.6
3,455,512 - +0.3
3,455,590 - +0.1
3,455,703 - MIT1002_03100 0.21 +0.7
3,455,712 - MIT1002_03100 0.23 -0.4
3,455,718 + MIT1002_03100 0.24 +0.2
3,455,778 + MIT1002_03100 0.34 +2.0
3,455,833 + MIT1002_03100 0.44 -0.9
3,455,833 + MIT1002_03100 0.44 +0.4
3,455,841 - MIT1002_03100 0.46 +1.1
3,455,841 - MIT1002_03100 0.46 -0.2
3,455,841 - MIT1002_03100 0.46 -0.5
3,455,857 + MIT1002_03100 0.48 +0.5
3,455,899 + MIT1002_03100 0.56 +0.1
3,455,900 + MIT1002_03100 0.56 +1.7
3,455,900 + MIT1002_03100 0.56 +0.7
3,455,908 - MIT1002_03100 0.58 +1.2
3,455,908 - MIT1002_03100 0.58 -0.1
3,455,953 - MIT1002_03100 0.66 +0.5
3,455,953 - MIT1002_03100 0.66 +0.4
3,455,969 + MIT1002_03100 0.68 +1.1
3,455,969 + MIT1002_03100 0.68 +0.8
3,455,969 + MIT1002_03100 0.68 -0.7
3,455,969 + MIT1002_03100 0.68 +0.4
3,455,969 + MIT1002_03100 0.68 +0.3
3,455,969 + MIT1002_03100 0.68 +0.2
3,455,977 - MIT1002_03100 0.70 +0.5
3,455,977 - MIT1002_03100 0.70 -0.7
3,455,977 - MIT1002_03100 0.70 -0.4
3,455,977 - MIT1002_03100 0.70 -0.2
3,455,977 - MIT1002_03100 0.70 +0.0
3,455,977 - MIT1002_03100 0.70 -1.5
3,455,977 - MIT1002_03100 0.70 -0.4
3,455,977 - MIT1002_03100 0.70 -0.3
3,455,977 - MIT1002_03100 0.70 -0.5
3,455,981 + MIT1002_03100 0.71 +1.1
3,455,981 + MIT1002_03100 0.71 +0.3
3,455,981 + MIT1002_03100 0.71 -1.5
3,455,989 - MIT1002_03100 0.72 +1.8
3,456,039 + MIT1002_03100 0.81 +1.5
3,456,047 + MIT1002_03100 0.82 +0.1
3,456,181 + +0.4
3,456,197 + -0.0
3,456,202 + -0.3
3,456,292 - MIT1002_03101 0.13 +0.0
3,456,321 - MIT1002_03101 0.18 +0.3
3,456,337 + MIT1002_03101 0.20 -0.5
3,456,341 + MIT1002_03101 0.21 +0.2
3,456,438 + MIT1002_03101 0.35 -0.7
3,456,479 - MIT1002_03101 0.42 -0.2
3,456,516 + MIT1002_03101 0.47 -0.6
3,456,521 + MIT1002_03101 0.48 -0.9
3,456,576 + MIT1002_03101 0.56 -1.8
3,456,584 - MIT1002_03101 0.58 +0.3
3,456,648 + MIT1002_03101 0.67 -0.3
3,456,669 - MIT1002_03101 0.70 +0.6
3,456,713 - MIT1002_03101 0.77 -0.1
3,456,771 + MIT1002_03101 0.86 +0.3
3,456,786 + MIT1002_03101 0.88 +0.2
3,456,822 + +1.1
3,456,867 - -0.2
3,456,867 - +0.2
3,456,872 - +0.2
3,456,925 + -1.9
3,456,933 - +0.3
3,456,954 + -0.6
3,456,970 + +1.2
3,457,003 + -1.9
3,457,011 - -0.0
3,457,011 - +0.3
3,457,011 - +0.6
3,457,011 - +1.3
3,457,015 + -0.4
3,457,057 + +0.8
3,457,127 + MIT1002_03102 0.17 -1.2
3,457,262 + MIT1002_03102 0.31 +0.4
3,457,263 - MIT1002_03102 0.32 +0.3
3,457,309 + MIT1002_03102 0.36 -0.5
3,457,314 + MIT1002_03102 0.37 -0.4
3,457,316 + MIT1002_03102 0.37 -0.9
3,457,319 + MIT1002_03102 0.38 +0.2
3,457,370 + MIT1002_03102 0.43 -2.6
3,457,378 - MIT1002_03102 0.44 +0.9
3,457,447 - MIT1002_03102 0.51 -1.3
3,457,466 + MIT1002_03102 0.53 +0.8
3,457,580 - MIT1002_03102 0.66 +0.5
3,457,580 - MIT1002_03102 0.66 -0.4
3,457,582 + MIT1002_03102 0.66 -0.2
3,457,590 - MIT1002_03102 0.67 +0.0
3,457,598 + MIT1002_03102 0.68 +0.1
3,457,608 + MIT1002_03102 0.69 -0.0
3,457,716 - MIT1002_03102 0.80 -2.1
3,457,795 + MIT1002_03102 0.89 +0.2
3,457,811 - +0.7
3,457,813 + +0.8
3,457,827 + +0.1
3,457,827 + -0.0
3,457,827 + -0.8
3,457,835 - +0.8
3,457,835 - +0.6
3,457,861 + +1.2
3,457,861 + +1.7

Or see this region's nucleotide sequence