Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01607

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01604 and MIT1002_01605 are separated by 118 nucleotidesMIT1002_01605 and MIT1002_01606 are separated by 18 nucleotidesMIT1002_01606 and MIT1002_01607 are separated by 290 nucleotidesMIT1002_01607 and MIT1002_01608 are separated by 38 nucleotides MIT1002_01604: MIT1002_01604 - Translation initiation factor IF-3, at 1,768,620 to 1,769,054 _01604 MIT1002_01605: MIT1002_01605 - Ribosomal protein A, at 1,769,173 to 1,769,370 _01605 MIT1002_01606: MIT1002_01606 - 50S ribosomal protein L20, at 1,769,389 to 1,769,745 _01606 MIT1002_01607: MIT1002_01607 - Mannose-1-phosphate guanylyltransferase 1, at 1,770,036 to 1,770,314 _01607 MIT1002_01608: MIT1002_01608 - UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase, at 1,770,353 to 1,771,792 _01608 Position (kb) 1770 1771Strain fitness (log2 ratio) -2 -1 0 1at 1769.851 kb on + strandat 1769.859 kb on - strandat 1769.861 kb on + strandat 1769.869 kb on - strandat 1769.947 kb on + strandat 1770.018 kb on + strandat 1770.018 kb on + strandat 1770.123 kb on - strand, within MIT1002_01607at 1770.158 kb on + strand, within MIT1002_01607at 1770.166 kb on - strand, within MIT1002_01607at 1770.176 kb on - strand, within MIT1002_01607at 1770.430 kb on + strandat 1770.466 kb on - strandat 1770.508 kb on + strand, within MIT1002_01608at 1770.509 kb on - strand, within MIT1002_01608at 1770.516 kb on - strand, within MIT1002_01608at 1770.537 kb on + strand, within MIT1002_01608at 1770.550 kb on + strand, within MIT1002_01608at 1770.632 kb on + strand, within MIT1002_01608at 1770.634 kb on + strand, within MIT1002_01608at 1770.656 kb on - strand, within MIT1002_01608at 1770.746 kb on + strand, within MIT1002_01608at 1770.809 kb on - strand, within MIT1002_01608at 1770.902 kb on + strand, within MIT1002_01608at 1770.902 kb on + strand, within MIT1002_01608at 1770.910 kb on - strand, within MIT1002_01608at 1770.910 kb on - strand, within MIT1002_01608at 1770.961 kb on + strand, within MIT1002_01608at 1770.961 kb on + strand, within MIT1002_01608at 1770.969 kb on - strand, within MIT1002_01608at 1770.969 kb on - strand, within MIT1002_01608at 1770.976 kb on - strand, within MIT1002_01608at 1770.977 kb on - strand, within MIT1002_01608at 1771.001 kb on - strand, within MIT1002_01608at 1771.046 kb on + strand, within MIT1002_01608at 1771.048 kb on + strand, within MIT1002_01608at 1771.080 kb on - strand, within MIT1002_01608at 1771.203 kb on + strand, within MIT1002_01608at 1771.244 kb on - strand, within MIT1002_01608at 1771.292 kb on - strand, within MIT1002_01608

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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1,769,851 + -0.4
1,769,859 - +0.0
1,769,861 + +0.9
1,769,869 - -0.4
1,769,947 + +0.6
1,770,018 + +0.2
1,770,018 + -0.2
1,770,123 - MIT1002_01607 0.31 +1.7
1,770,158 + MIT1002_01607 0.44 +1.7
1,770,166 - MIT1002_01607 0.47 -1.8
1,770,176 - MIT1002_01607 0.50 +0.2
1,770,430 + +1.3
1,770,466 - -1.0
1,770,508 + MIT1002_01608 0.11 -0.2
1,770,509 - MIT1002_01608 0.11 +0.6
1,770,516 - MIT1002_01608 0.11 -2.2
1,770,537 + MIT1002_01608 0.13 +1.6
1,770,550 + MIT1002_01608 0.14 +0.7
1,770,632 + MIT1002_01608 0.19 -0.7
1,770,634 + MIT1002_01608 0.20 -0.2
1,770,656 - MIT1002_01608 0.21 -0.4
1,770,746 + MIT1002_01608 0.27 -0.0
1,770,809 - MIT1002_01608 0.32 -0.2
1,770,902 + MIT1002_01608 0.38 -0.0
1,770,902 + MIT1002_01608 0.38 +0.6
1,770,910 - MIT1002_01608 0.39 +0.3
1,770,910 - MIT1002_01608 0.39 -0.1
1,770,961 + MIT1002_01608 0.42 +1.2
1,770,961 + MIT1002_01608 0.42 -0.3
1,770,969 - MIT1002_01608 0.43 -1.4
1,770,969 - MIT1002_01608 0.43 +0.1
1,770,976 - MIT1002_01608 0.43 -1.6
1,770,977 - MIT1002_01608 0.43 -0.0
1,771,001 - MIT1002_01608 0.45 -1.2
1,771,046 + MIT1002_01608 0.48 -0.7
1,771,048 + MIT1002_01608 0.48 -0.3
1,771,080 - MIT1002_01608 0.50 +1.6
1,771,203 + MIT1002_01608 0.59 +0.1
1,771,244 - MIT1002_01608 0.62 -0.8
1,771,292 - MIT1002_01608 0.65 +0.2

Or see this region's nucleotide sequence