Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01591

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
1,751,413	+				+0.7
1,751,413	+				+1.2
1,751,600	-		MIT1002_01589	0.50	-1.8
1,751,638	-		MIT1002_01589	0.61	-1.3
1,751,638	-		MIT1002_01589	0.61	-0.2
1,751,642	+		MIT1002_01589	0.63	+0.5
1,751,650	-		MIT1002_01589	0.65	-0.4
1,751,757	+				-1.9
1,751,803	-				+1.5
1,751,884	-				+0.7
1,752,000	-				-0.8
1,752,122	+		MIT1002_01590	0.37	-0.1
1,752,122	+		MIT1002_01590	0.37	+0.2
1,752,122	+		MIT1002_01590	0.37	+1.5
1,752,122	+		MIT1002_01590	0.37	+0.2
1,752,122	+		MIT1002_01590	0.37	-1.5
1,752,122	+		MIT1002_01590	0.37	+1.9
1,752,130	-		MIT1002_01590	0.39	+1.4
1,752,130	-		MIT1002_01590	0.39	+1.2
1,752,130	-		MIT1002_01590	0.39	-0.1
1,752,130	-		MIT1002_01590	0.39	+1.5
1,752,130	-		MIT1002_01590	0.39	+0.0
1,752,130	-		MIT1002_01590	0.39	+0.1
1,752,130	-		MIT1002_01590	0.39	+0.3
1,752,130	-		MIT1002_01590	0.39	-0.0
1,752,148	+		MIT1002_01590	0.44	-0.1
1,752,247	-		MIT1002_01590	0.71	+1.7
1,752,329	+				+0.9
1,752,390	+				-0.2
1,752,396	-				+0.5
1,752,433	+				+0.2
1,752,461	-				-0.5
1,752,463	-				-0.2
1,752,477	+				+1.0
1,752,505	-				-0.5
1,752,544	+		MIT1002_01591	0.12	+2.5
1,752,544	+		MIT1002_01591	0.12	-1.1
1,752,544	+		MIT1002_01591	0.12	-1.0
1,752,552	-		MIT1002_01591	0.13	-1.6
1,752,552	-		MIT1002_01591	0.13	-0.9
1,752,577	-		MIT1002_01591	0.15	+0.4
1,752,584	-		MIT1002_01591	0.16	-0.9
1,752,893	+		MIT1002_01591	0.40	+0.3
1,752,922	+		MIT1002_01591	0.43	+0.1
1,752,922	+		MIT1002_01591	0.43	-2.1
1,752,922	+		MIT1002_01591	0.43	+0.5
1,752,928	-		MIT1002_01591	0.43	-1.0
1,752,932	+		MIT1002_01591	0.43	+0.9
1,752,940	-		MIT1002_01591	0.44	-0.4
1,752,940	-		MIT1002_01591	0.44	-0.0
1,752,940	-		MIT1002_01591	0.44	-0.6
1,753,000	-		MIT1002_01591	0.49	-1.2
1,753,044	-		MIT1002_01591	0.52	+0.6
1,753,049	-		MIT1002_01591	0.53	-0.0
1,753,053	+		MIT1002_01591	0.53	-0.8
1,753,061	-		MIT1002_01591	0.54	-0.1
1,753,140	-		MIT1002_01591	0.60	-0.7
1,753,231	-		MIT1002_01591	0.67	+0.2
1,753,305	-		MIT1002_01591	0.73	-0.7
1,753,378	-		MIT1002_01591	0.79	-0.1
1,753,485	+		MIT1002_01591	0.87	-0.9
1,753,494	-		MIT1002_01591	0.88	-1.4
1,753,544	-				-0.4
1,753,554	-				-0.7
1,753,557	+				-1.7
1,753,557	+				-0.8
1,753,557	+				-0.0
1,753,557	+				-1.1
1,753,557	+				+0.6
1,753,565	-				-1.7
1,753,565	-				-2.5
1,753,575	-				-0.7
1,753,599	-				-0.3
1,753,656	+				-1.0
1,753,656	+				-0.5
1,753,656	+				-0.5
1,753,656	+				-2.7
1,753,664	-				-1.5
1,753,664	-				-0.7
1,753,688	+				+1.0
1,753,688	+				-1.6
1,753,696	-				-0.1
1,753,719	-				+0.8
1,753,753	-				+0.3
1,753,755	-				-1.6
1,753,794	+		MIT1002_01592	0.13	-0.9
1,753,833	-		MIT1002_01592	0.16	-0.9
1,753,861	+		MIT1002_01592	0.18	-2.2
1,753,912	-		MIT1002_01592	0.22	-2.4
1,753,952	+		MIT1002_01592	0.25	+0.0
1,753,961	-		MIT1002_01592	0.26	-0.2
1,753,975	-		MIT1002_01592	0.27	-0.0
1,754,001	+		MIT1002_01592	0.29	+0.2
1,754,024	+		MIT1002_01592	0.31	-1.6
1,754,024	+		MIT1002_01592	0.31	-0.2
1,754,032	-		MIT1002_01592	0.31	-3.1
1,754,064	+		MIT1002_01592	0.34	-0.5
1,754,067	+		MIT1002_01592	0.34	+0.2
1,754,067	+		MIT1002_01592	0.34	-0.7
1,754,286	+		MIT1002_01592	0.51	-0.7
1,754,289	-		MIT1002_01592	0.52	+2.9
1,754,291	-		MIT1002_01592	0.52	-1.5
1,754,305	+		MIT1002_01592	0.53	-0.4
1,754,307	-		MIT1002_01592	0.53	-0.4
1,754,311	-		MIT1002_01592	0.53	+0.0
1,754,458	-		MIT1002_01592	0.65	-0.6
1,754,511	+		MIT1002_01592	0.69	-0.5
1,754,514	-		MIT1002_01592	0.69	-1.3
1,754,514	-		MIT1002_01592	0.69	-0.2
1,754,519	-		MIT1002_01592	0.70	-1.4
1,754,519	-		MIT1002_01592	0.70	-0.5
1,754,536	+		MIT1002_01592	0.71	+0.2
1,754,536	+		MIT1002_01592	0.71	+0.7
1,754,536	+		MIT1002_01592	0.71	-1.5
1,754,590	+		MIT1002_01592	0.75	-0.3
1,754,640	-		MIT1002_01592	0.79	-0.4