Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01237

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
1,362,917	+		MIT1002_01236	0.65	-0.3
1,362,925	-		MIT1002_01236	0.66	-1.9
1,362,946	+		MIT1002_01236	0.66	-1.6
1,362,963	+		MIT1002_01236	0.67	-1.6
1,363,025	+		MIT1002_01236	0.69	-1.1
1,363,025	+		MIT1002_01236	0.69	+1.2
1,363,043	-		MIT1002_01236	0.70	-1.0
1,363,045	+		MIT1002_01236	0.70	-2.3
1,363,045	+		MIT1002_01236	0.70	-1.6
1,363,055	+		MIT1002_01236	0.71	-0.8
1,363,069	+		MIT1002_01236	0.71	-2.2
1,363,077	-		MIT1002_01236	0.71	+0.0
1,363,077	-		MIT1002_01236	0.71	+0.5
1,363,092	+		MIT1002_01236	0.72	-0.5
1,363,092	+		MIT1002_01236	0.72	-0.1
1,363,110	+		MIT1002_01236	0.73	-1.6
1,363,158	-		MIT1002_01236	0.75	-1.2
1,363,173	-		MIT1002_01236	0.75	-0.2
1,363,217	-		MIT1002_01236	0.77	+0.4
1,363,217	-		MIT1002_01236	0.77	+0.2
1,363,231	-		MIT1002_01236	0.77	-1.1
1,363,322	+		MIT1002_01236	0.81	-1.5
1,363,330	-		MIT1002_01236	0.81	-0.5
1,363,406	+		MIT1002_01236	0.84	+1.1
1,363,452	+		MIT1002_01236	0.86	-0.9
1,363,483	-		MIT1002_01236	0.87	-1.2
1,363,493	+		MIT1002_01236	0.87	-1.6
1,363,493	-		MIT1002_01236	0.87	-0.8
1,363,499	-		MIT1002_01236	0.88	+0.3
1,363,562	+				-0.7
1,363,570	-				-0.8
1,363,580	-				-1.0
1,363,625	+				-1.8
1,363,722	+				-1.4
1,364,038	+		MIT1002_01237	0.22	-0.4
1,364,046	-		MIT1002_01237	0.23	-0.0
1,364,046	-		MIT1002_01237	0.23	-2.6
1,364,046	-		MIT1002_01237	0.23	-2.1
1,364,046	-		MIT1002_01237	0.23	-0.6
1,364,098	+		MIT1002_01237	0.31	-0.5
1,364,144	+		MIT1002_01237	0.39	-2.3
1,364,144	+		MIT1002_01237	0.39	-1.3
1,364,144	+		MIT1002_01237	0.39	-0.5
1,364,144	+		MIT1002_01237	0.39	-0.1
1,364,144	+		MIT1002_01237	0.39	-0.8
1,364,144	+		MIT1002_01237	0.39	+0.1
1,364,144	+		MIT1002_01237	0.39	-0.8
1,364,152	-		MIT1002_01237	0.40	-1.8
1,364,152	-		MIT1002_01237	0.40	-2.2
1,364,152	-		MIT1002_01237	0.40	+0.6
1,364,152	-		MIT1002_01237	0.40	-1.8
1,364,152	-		MIT1002_01237	0.40	-0.8
1,364,152	-		MIT1002_01237	0.40	-0.1
1,364,152	-		MIT1002_01237	0.40	-2.7
1,364,155	+		MIT1002_01237	0.40	-2.4
1,364,210	+		MIT1002_01237	0.49	-0.3
1,364,219	+		MIT1002_01237	0.51	-0.1
1,364,403	-		MIT1002_01237	0.80	-1.1
1,364,418	-		MIT1002_01237	0.82	-1.8
1,364,433	+		MIT1002_01237	0.84	-0.1
1,364,441	+		MIT1002_01237	0.86	-1.7
1,364,461	-		MIT1002_01237	0.89	-1.3
1,364,468	+				-0.3
1,364,479	+				+3.7
1,364,484	-				+2.0
1,364,513	+				-0.8
1,364,591	+				+4.0
1,364,619	-				+4.5
1,364,660	+		MIT1002_01238	0.12	+3.4
1,364,670	+		MIT1002_01238	0.13	+4.5
1,364,677	+		MIT1002_01238	0.14	+2.9
1,364,685	-		MIT1002_01238	0.14	+3.6
1,364,748	+		MIT1002_01238	0.20	+3.8
1,364,805	-		MIT1002_01238	0.26	+4.3
1,364,851	-		MIT1002_01238	0.30	+3.9
1,364,951	+		MIT1002_01238	0.40	+4.5
1,364,951	+		MIT1002_01238	0.40	+3.9
1,364,951	+		MIT1002_01238	0.40	+4.6
1,364,959	-		MIT1002_01238	0.40	+4.2
1,365,040	-		MIT1002_01238	0.48	+5.2
1,365,090	+		MIT1002_01238	0.53	-0.3
1,365,195	+		MIT1002_01238	0.63	-0.9
1,365,203	-		MIT1002_01238	0.63	+2.8
1,365,235	-		MIT1002_01238	0.66	+2.5
1,365,286	+		MIT1002_01238	0.71	+3.2
1,365,306	-		MIT1002_01238	0.73	+3.8
1,365,377	-		MIT1002_01238	0.80	+2.2
1,365,414	+		MIT1002_01238	0.83	-0.2
1,365,416	+		MIT1002_01238	0.84	+4.0
1,365,422	-		MIT1002_01238	0.84	+2.8
1,365,422	-		MIT1002_01238	0.84	+2.7
1,365,422	-		MIT1002_01238	0.84	+3.9
1,365,441	+		MIT1002_01238	0.86	+0.1
1,365,449	-		MIT1002_01238	0.87	+4.2
1,365,476	+		MIT1002_01238	0.89	+2.5
1,365,476	+		MIT1002_01238	0.89	+1.5
1,365,484	-				+1.5
1,365,522	-				+2.3
1,365,522	-				-0.5
1,365,524	+				+4.2