Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00770

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00769 and MIT1002_00770 are separated by 250 nucleotidesMIT1002_00770 and MIT1002_00771 are separated by 131 nucleotides MIT1002_00769: MIT1002_00769 - Transposase, at 849,227 to 850,423 _00769 MIT1002_00770: MIT1002_00770 - Signal transduction histidine-protein kinase BarA, at 850,674 to 852,386 _00770 MIT1002_00771: MIT1002_00771 - Ferri-bacillibactin esterase BesA, at 852,518 to 853,699 _00771 Position (kb) 850 851 852 853Strain fitness (log2 ratio) -2 -1 0 1 2 3at 850.558 kb on + strandat 850.614 kb on + strandat 850.614 kb on + strandat 850.624 kb on - strandat 850.669 kb on + strandat 850.677 kb on - strandat 850.685 kb on + strandat 850.687 kb on + strandat 850.835 kb on + strandat 850.835 kb on + strandat 850.835 kb on + strandat 850.843 kb on - strandat 850.843 kb on - strandat 850.843 kb on - strandat 850.843 kb on - strandat 850.887 kb on - strand, within MIT1002_00770at 850.911 kb on - strand, within MIT1002_00770at 850.974 kb on - strand, within MIT1002_00770at 851.003 kb on + strand, within MIT1002_00770at 851.011 kb on - strand, within MIT1002_00770at 851.033 kb on + strand, within MIT1002_00770at 851.040 kb on + strand, within MIT1002_00770at 851.041 kb on - strand, within MIT1002_00770at 851.079 kb on + strand, within MIT1002_00770at 851.098 kb on + strand, within MIT1002_00770at 851.104 kb on + strand, within MIT1002_00770at 851.106 kb on - strand, within MIT1002_00770at 851.119 kb on + strand, within MIT1002_00770at 851.119 kb on + strand, within MIT1002_00770at 851.127 kb on - strand, within MIT1002_00770at 851.127 kb on - strand, within MIT1002_00770at 851.127 kb on - strand, within MIT1002_00770at 851.127 kb on - strand, within MIT1002_00770at 851.148 kb on + strand, within MIT1002_00770at 851.170 kb on + strand, within MIT1002_00770at 851.178 kb on - strand, within MIT1002_00770at 851.202 kb on - strand, within MIT1002_00770at 851.286 kb on + strand, within MIT1002_00770at 851.294 kb on - strand, within MIT1002_00770at 851.322 kb on - strand, within MIT1002_00770at 851.322 kb on - strand, within MIT1002_00770at 851.344 kb on + strand, within MIT1002_00770at 851.344 kb on + strand, within MIT1002_00770at 851.344 kb on + strand, within MIT1002_00770at 851.351 kb on + strand, within MIT1002_00770at 851.351 kb on + strand, within MIT1002_00770at 851.352 kb on - strand, within MIT1002_00770at 851.359 kb on - strand, within MIT1002_00770at 851.359 kb on - strand, within MIT1002_00770at 851.359 kb on - strand, within MIT1002_00770at 851.409 kb on + strand, within MIT1002_00770at 851.418 kb on - strand, within MIT1002_00770at 851.527 kb on - strand, within MIT1002_00770at 851.527 kb on - strand, within MIT1002_00770at 851.539 kb on + strand, within MIT1002_00770at 851.579 kb on - strand, within MIT1002_00770at 851.601 kb on + strand, within MIT1002_00770at 851.606 kb on + strand, within MIT1002_00770at 851.640 kb on + strand, within MIT1002_00770at 851.640 kb on + strand, within MIT1002_00770at 851.648 kb on - strand, within MIT1002_00770at 851.648 kb on - strand, within MIT1002_00770at 851.656 kb on + strand, within MIT1002_00770at 851.664 kb on - strand, within MIT1002_00770at 851.725 kb on - strand, within MIT1002_00770at 851.725 kb on - strand, within MIT1002_00770at 851.731 kb on + strand, within MIT1002_00770at 851.731 kb on + strand, within MIT1002_00770at 851.814 kb on - strand, within MIT1002_00770at 851.817 kb on - strand, within MIT1002_00770at 851.850 kb on + strand, within MIT1002_00770at 851.886 kb on + strand, within MIT1002_00770at 851.894 kb on - strand, within MIT1002_00770at 851.894 kb on - strand, within MIT1002_00770at 851.894 kb on - strand, within MIT1002_00770at 851.935 kb on + strand, within MIT1002_00770at 851.965 kb on - strand, within MIT1002_00770at 851.970 kb on - strand, within MIT1002_00770at 852.010 kb on + strand, within MIT1002_00770at 852.015 kb on + strand, within MIT1002_00770at 852.018 kb on - strand, within MIT1002_00770at 852.046 kb on + strand, within MIT1002_00770at 852.051 kb on + strand, within MIT1002_00770at 852.077 kb on + strand, within MIT1002_00770at 852.090 kb on + strand, within MIT1002_00770at 852.132 kb on + strand, within MIT1002_00770at 852.256 kb on + strandat 852.300 kb on + strandat 852.310 kb on - strandat 852.312 kb on + strandat 852.318 kb on + strandat 852.369 kb on + strandat 852.376 kb on + strandat 852.381 kb on + strandat 852.381 kb on + strandat 852.384 kb on - strandat 852.593 kb on + strandat 852.636 kb on + strandat 852.692 kb on + strand, within MIT1002_00771at 852.765 kb on - strand, within MIT1002_00771at 852.765 kb on - strand, within MIT1002_00771at 852.856 kb on - strand, within MIT1002_00771at 852.856 kb on - strand, within MIT1002_00771at 852.879 kb on + strand, within MIT1002_00771at 852.887 kb on - strand, within MIT1002_00771at 852.935 kb on - strand, within MIT1002_00771at 852.982 kb on + strand, within MIT1002_00771at 852.988 kb on + strand, within MIT1002_00771at 852.997 kb on + strand, within MIT1002_00771at 853.018 kb on + strand, within MIT1002_00771at 853.026 kb on - strand, within MIT1002_00771at 853.045 kb on + strand, within MIT1002_00771at 853.045 kb on + strand, within MIT1002_00771at 853.060 kb on + strand, within MIT1002_00771at 853.060 kb on + strand, within MIT1002_00771at 853.060 kb on + strand, within MIT1002_00771at 853.060 kb on + strand, within MIT1002_00771at 853.060 kb on + strand, within MIT1002_00771at 853.060 kb on + strand, within MIT1002_00771at 853.068 kb on + strand, within MIT1002_00771at 853.068 kb on - strand, within MIT1002_00771at 853.068 kb on - strand, within MIT1002_00771at 853.105 kb on + strand, within MIT1002_00771at 853.154 kb on - strand, within MIT1002_00771at 853.247 kb on - strand, within MIT1002_00771at 853.342 kb on - strand, within MIT1002_00771at 853.349 kb on + strand, within MIT1002_00771at 853.352 kb on - strand, within MIT1002_00771at 853.374 kb on + strand, within MIT1002_00771

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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850,558 + +0.2
850,614 + -0.3
850,614 + +0.7
850,624 - +0.1
850,669 + -1.7
850,677 - -0.5
850,685 + +0.3
850,687 + -0.3
850,835 + +1.3
850,835 + +0.3
850,835 + -1.9
850,843 - +0.3
850,843 - +0.0
850,843 - -0.1
850,843 - +0.4
850,887 - MIT1002_00770 0.12 +0.9
850,911 - MIT1002_00770 0.14 -1.8
850,974 - MIT1002_00770 0.18 +0.2
851,003 + MIT1002_00770 0.19 -0.3
851,011 - MIT1002_00770 0.20 -0.2
851,033 + MIT1002_00770 0.21 +0.4
851,040 + MIT1002_00770 0.21 -0.3
851,041 - MIT1002_00770 0.21 +0.4
851,079 + MIT1002_00770 0.24 +0.2
851,098 + MIT1002_00770 0.25 +0.3
851,104 + MIT1002_00770 0.25 +0.7
851,106 - MIT1002_00770 0.25 -0.1
851,119 + MIT1002_00770 0.26 -1.9
851,119 + MIT1002_00770 0.26 -1.0
851,127 - MIT1002_00770 0.26 -0.3
851,127 - MIT1002_00770 0.26 -0.2
851,127 - MIT1002_00770 0.26 -0.4
851,127 - MIT1002_00770 0.26 -0.3
851,148 + MIT1002_00770 0.28 +0.6
851,170 + MIT1002_00770 0.29 -0.0
851,178 - MIT1002_00770 0.29 +0.6
851,202 - MIT1002_00770 0.31 -1.0
851,286 + MIT1002_00770 0.36 +0.1
851,294 - MIT1002_00770 0.36 +0.6
851,322 - MIT1002_00770 0.38 -0.7
851,322 - MIT1002_00770 0.38 -0.9
851,344 + MIT1002_00770 0.39 -0.3
851,344 + MIT1002_00770 0.39 -1.7
851,344 + MIT1002_00770 0.39 +1.0
851,351 + MIT1002_00770 0.40 +0.6
851,351 + MIT1002_00770 0.40 +0.4
851,352 - MIT1002_00770 0.40 -1.8
851,359 - MIT1002_00770 0.40 +0.4
851,359 - MIT1002_00770 0.40 -0.8
851,359 - MIT1002_00770 0.40 +2.2
851,409 + MIT1002_00770 0.43 +0.2
851,418 - MIT1002_00770 0.43 +0.6
851,527 - MIT1002_00770 0.50 -0.9
851,527 - MIT1002_00770 0.50 -0.3
851,539 + MIT1002_00770 0.50 -0.7
851,579 - MIT1002_00770 0.53 +0.6
851,601 + MIT1002_00770 0.54 -0.2
851,606 + MIT1002_00770 0.54 +0.5
851,640 + MIT1002_00770 0.56 -1.3
851,640 + MIT1002_00770 0.56 -0.2
851,648 - MIT1002_00770 0.57 -0.6
851,648 - MIT1002_00770 0.57 -0.1
851,656 + MIT1002_00770 0.57 +0.2
851,664 - MIT1002_00770 0.58 -1.0
851,725 - MIT1002_00770 0.61 +0.2
851,725 - MIT1002_00770 0.61 -1.5
851,731 + MIT1002_00770 0.62 -0.1
851,731 + MIT1002_00770 0.62 -0.7
851,814 - MIT1002_00770 0.67 -0.4
851,817 - MIT1002_00770 0.67 -0.2
851,850 + MIT1002_00770 0.69 +0.2
851,886 + MIT1002_00770 0.71 -0.8
851,894 - MIT1002_00770 0.71 -0.2
851,894 - MIT1002_00770 0.71 +0.1
851,894 - MIT1002_00770 0.71 -1.0
851,935 + MIT1002_00770 0.74 +0.7
851,965 - MIT1002_00770 0.75 +0.4
851,970 - MIT1002_00770 0.76 -0.3
852,010 + MIT1002_00770 0.78 +0.3
852,015 + MIT1002_00770 0.78 +0.2
852,018 - MIT1002_00770 0.78 -1.6
852,046 + MIT1002_00770 0.80 +0.1
852,051 + MIT1002_00770 0.80 -1.1
852,077 + MIT1002_00770 0.82 -0.7
852,090 + MIT1002_00770 0.83 -1.2
852,132 + MIT1002_00770 0.85 +0.5
852,256 + +0.3
852,300 + +0.5
852,310 - +0.3
852,312 + +0.9
852,318 + -1.2
852,369 + +0.7
852,376 + +0.7
852,381 + -0.3
852,381 + -1.5
852,384 - -0.4
852,593 + +0.5
852,636 + +1.6
852,692 + MIT1002_00771 0.15 -0.2
852,765 - MIT1002_00771 0.21 +0.4
852,765 - MIT1002_00771 0.21 +0.2
852,856 - MIT1002_00771 0.29 -0.3
852,856 - MIT1002_00771 0.29 -2.0
852,879 + MIT1002_00771 0.31 +0.3
852,887 - MIT1002_00771 0.31 +1.2
852,935 - MIT1002_00771 0.35 +0.1
852,982 + MIT1002_00771 0.39 +0.5
852,988 + MIT1002_00771 0.40 +3.2
852,997 + MIT1002_00771 0.41 -0.2
853,018 + MIT1002_00771 0.42 -0.1
853,026 - MIT1002_00771 0.43 -0.4
853,045 + MIT1002_00771 0.45 -1.7
853,045 + MIT1002_00771 0.45 -0.6
853,060 + MIT1002_00771 0.46 +0.4
853,060 + MIT1002_00771 0.46 -0.2
853,060 + MIT1002_00771 0.46 -0.6
853,060 + MIT1002_00771 0.46 +0.4
853,060 + MIT1002_00771 0.46 -0.1
853,060 + MIT1002_00771 0.46 -1.0
853,068 + MIT1002_00771 0.47 +0.1
853,068 - MIT1002_00771 0.47 +1.5
853,068 - MIT1002_00771 0.47 +0.1
853,105 + MIT1002_00771 0.50 -0.4
853,154 - MIT1002_00771 0.54 -0.2
853,247 - MIT1002_00771 0.62 -0.8
853,342 - MIT1002_00771 0.70 +0.2
853,349 + MIT1002_00771 0.70 +1.0
853,352 - MIT1002_00771 0.71 -0.6
853,374 + MIT1002_00771 0.72 -1.1

Or see this region's nucleotide sequence