Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00721

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00719 and MIT1002_00720 are separated by 479 nucleotidesMIT1002_00720 and MIT1002_00721 are separated by 122 nucleotidesMIT1002_00721 and MIT1002_00722 are separated by 92 nucleotides MIT1002_00719: MIT1002_00719 - cytochrome c oxidase accessory protein CcoG, at 786,350 to 787,780 _00719 MIT1002_00720: MIT1002_00720 - hypothetical protein, at 788,260 to 788,631 _00720 MIT1002_00721: MIT1002_00721 - hypothetical protein, at 788,754 to 789,299 _00721 MIT1002_00722: MIT1002_00722 - Acyl-CoA dehydrogenase, at 789,392 to 791,152 _00722 Position (kb) 788 789 790Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 787.755 kb on - strandat 787.790 kb on - strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.824 kb on - strandat 787.842 kb on + strandat 787.944 kb on + strandat 787.946 kb on + strandat 788.049 kb on - strandat 788.182 kb on + strandat 788.316 kb on + strand, within MIT1002_00720at 788.324 kb on - strand, within MIT1002_00720at 788.331 kb on + strand, within MIT1002_00720at 788.345 kb on - strand, within MIT1002_00720at 788.412 kb on - strand, within MIT1002_00720at 788.447 kb on + strand, within MIT1002_00720at 788.452 kb on - strand, within MIT1002_00720at 788.455 kb on - strand, within MIT1002_00720at 788.528 kb on - strand, within MIT1002_00720at 788.530 kb on - strand, within MIT1002_00720at 788.588 kb on + strand, within MIT1002_00720at 788.598 kb on + strandat 788.635 kb on + strandat 788.643 kb on - strandat 788.655 kb on + strandat 788.718 kb on + strandat 788.807 kb on - strandat 788.825 kb on + strand, within MIT1002_00721at 788.878 kb on - strand, within MIT1002_00721at 788.887 kb on + strand, within MIT1002_00721at 788.900 kb on - strand, within MIT1002_00721at 788.932 kb on + strand, within MIT1002_00721at 788.971 kb on - strand, within MIT1002_00721at 789.023 kb on + strand, within MIT1002_00721at 789.028 kb on + strand, within MIT1002_00721at 789.031 kb on - strand, within MIT1002_00721at 789.031 kb on - strand, within MIT1002_00721at 789.031 kb on - strand, within MIT1002_00721at 789.054 kb on - strand, within MIT1002_00721at 789.214 kb on + strand, within MIT1002_00721at 789.367 kb on + strandat 789.367 kb on + strandat 789.367 kb on + strandat 789.367 kb on + strandat 789.367 kb on + strandat 789.372 kb on + strandat 789.375 kb on - strandat 789.375 kb on - strandat 789.375 kb on - strandat 789.375 kb on - strandat 789.375 kb on - strandat 789.474 kb on - strandat 789.507 kb on + strandat 789.567 kb on + strandat 789.569 kb on + strand, within MIT1002_00722at 789.575 kb on - strand, within MIT1002_00722at 789.577 kb on - strand, within MIT1002_00722at 789.582 kb on - strand, within MIT1002_00722at 789.582 kb on - strand, within MIT1002_00722at 789.585 kb on - strand, within MIT1002_00722at 789.599 kb on + strand, within MIT1002_00722at 789.622 kb on + strand, within MIT1002_00722at 789.638 kb on + strand, within MIT1002_00722at 789.697 kb on + strand, within MIT1002_00722at 789.705 kb on + strand, within MIT1002_00722at 789.727 kb on - strand, within MIT1002_00722at 789.801 kb on - strand, within MIT1002_00722at 789.802 kb on + strand, within MIT1002_00722at 789.808 kb on + strand, within MIT1002_00722at 789.844 kb on + strand, within MIT1002_00722at 789.907 kb on - strand, within MIT1002_00722at 789.952 kb on - strand, within MIT1002_00722at 789.971 kb on - strand, within MIT1002_00722at 790.023 kb on + strand, within MIT1002_00722at 790.038 kb on - strand, within MIT1002_00722at 790.041 kb on - strand, within MIT1002_00722at 790.069 kb on + strand, within MIT1002_00722at 790.099 kb on + strand, within MIT1002_00722at 790.116 kb on - strand, within MIT1002_00722at 790.125 kb on + strand, within MIT1002_00722at 790.146 kb on + strand, within MIT1002_00722at 790.154 kb on - strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.169 kb on + strand, within MIT1002_00722at 790.177 kb on - strand, within MIT1002_00722at 790.177 kb on - strand, within MIT1002_00722at 790.177 kb on - strand, within MIT1002_00722at 790.177 kb on - strand, within MIT1002_00722at 790.208 kb on + strand, within MIT1002_00722at 790.222 kb on + strand, within MIT1002_00722at 790.222 kb on + strand, within MIT1002_00722at 790.240 kb on + strand, within MIT1002_00722at 790.240 kb on + strand, within MIT1002_00722at 790.248 kb on - strand, within MIT1002_00722at 790.248 kb on - strand, within MIT1002_00722at 790.248 kb on - strand, within MIT1002_00722at 790.248 kb on - strand, within MIT1002_00722at 790.248 kb on - strand, within MIT1002_00722at 790.249 kb on - strand, within MIT1002_00722at 790.268 kb on - strand, within MIT1002_00722at 790.298 kb on + strand, within MIT1002_00722

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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787,755 - -1.7
787,790 - +0.5
787,818 + -0.1
787,818 + +1.2
787,818 + +0.9
787,818 + +0.6
787,818 + -1.4
787,824 - -0.7
787,842 + -0.4
787,944 + +1.1
787,946 + +1.3
788,049 - -0.5
788,182 + +1.1
788,316 + MIT1002_00720 0.15 -1.7
788,324 - MIT1002_00720 0.17 -3.2
788,331 + MIT1002_00720 0.19 -0.0
788,345 - MIT1002_00720 0.23 -1.1
788,412 - MIT1002_00720 0.41 -0.9
788,447 + MIT1002_00720 0.50 +0.3
788,452 - MIT1002_00720 0.52 +0.4
788,455 - MIT1002_00720 0.52 +4.1
788,528 - MIT1002_00720 0.72 +0.4
788,530 - MIT1002_00720 0.73 -0.3
788,588 + MIT1002_00720 0.88 +0.1
788,598 + +0.6
788,635 + +1.2
788,643 - +1.1
788,655 + -0.3
788,718 + -0.7
788,807 - -0.1
788,825 + MIT1002_00721 0.13 -0.3
788,878 - MIT1002_00721 0.23 -1.0
788,887 + MIT1002_00721 0.24 +0.2
788,900 - MIT1002_00721 0.27 -0.1
788,932 + MIT1002_00721 0.33 +0.2
788,971 - MIT1002_00721 0.40 +0.8
789,023 + MIT1002_00721 0.49 +1.1
789,028 + MIT1002_00721 0.50 +0.0
789,031 - MIT1002_00721 0.51 -1.1
789,031 - MIT1002_00721 0.51 -1.2
789,031 - MIT1002_00721 0.51 +0.8
789,054 - MIT1002_00721 0.55 +1.5
789,214 + MIT1002_00721 0.84 +1.1
789,367 + -2.6
789,367 + +1.1
789,367 + -0.2
789,367 + -1.0
789,367 + +1.9
789,372 + -0.3
789,375 - -0.7
789,375 - +0.3
789,375 - +0.5
789,375 - +2.4
789,375 - +0.8
789,474 - -0.3
789,507 + -0.5
789,567 + -0.0
789,569 + MIT1002_00722 0.10 -0.3
789,575 - MIT1002_00722 0.10 +0.6
789,577 - MIT1002_00722 0.11 +0.9
789,582 - MIT1002_00722 0.11 -0.4
789,582 - MIT1002_00722 0.11 -0.0
789,585 - MIT1002_00722 0.11 +0.7
789,599 + MIT1002_00722 0.12 +0.9
789,622 + MIT1002_00722 0.13 -0.3
789,638 + MIT1002_00722 0.14 -1.9
789,697 + MIT1002_00722 0.17 -0.3
789,705 + MIT1002_00722 0.18 -1.3
789,727 - MIT1002_00722 0.19 -1.2
789,801 - MIT1002_00722 0.23 +0.1
789,802 + MIT1002_00722 0.23 -0.7
789,808 + MIT1002_00722 0.24 +0.0
789,844 + MIT1002_00722 0.26 -0.8
789,907 - MIT1002_00722 0.29 +0.3
789,952 - MIT1002_00722 0.32 -0.3
789,971 - MIT1002_00722 0.33 -0.7
790,023 + MIT1002_00722 0.36 -0.8
790,038 - MIT1002_00722 0.37 +0.6
790,041 - MIT1002_00722 0.37 -0.8
790,069 + MIT1002_00722 0.38 -1.0
790,099 + MIT1002_00722 0.40 -0.6
790,116 - MIT1002_00722 0.41 +0.6
790,125 + MIT1002_00722 0.42 +0.2
790,146 + MIT1002_00722 0.43 -0.1
790,154 - MIT1002_00722 0.43 +0.7
790,169 + MIT1002_00722 0.44 -0.2
790,169 + MIT1002_00722 0.44 -0.2
790,169 + MIT1002_00722 0.44 -0.6
790,169 + MIT1002_00722 0.44 -0.1
790,169 + MIT1002_00722 0.44 +0.1
790,169 + MIT1002_00722 0.44 -0.6
790,169 + MIT1002_00722 0.44 -1.1
790,169 + MIT1002_00722 0.44 -2.6
790,177 - MIT1002_00722 0.45 +1.0
790,177 - MIT1002_00722 0.45 -0.4
790,177 - MIT1002_00722 0.45 -0.8
790,177 - MIT1002_00722 0.45 -0.5
790,208 + MIT1002_00722 0.46 +0.7
790,222 + MIT1002_00722 0.47 -0.7
790,222 + MIT1002_00722 0.47 -0.6
790,240 + MIT1002_00722 0.48 -0.0
790,240 + MIT1002_00722 0.48 -0.2
790,248 - MIT1002_00722 0.49 -0.3
790,248 - MIT1002_00722 0.49 -0.6
790,248 - MIT1002_00722 0.49 +0.8
790,248 - MIT1002_00722 0.49 -0.9
790,248 - MIT1002_00722 0.49 +0.4
790,249 - MIT1002_00722 0.49 +0.3
790,268 - MIT1002_00722 0.50 +0.4
790,298 + MIT1002_00722 0.51 -0.9

Or see this region's nucleotide sequence