Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00662

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00661 and MIT1002_00662 are separated by 93 nucleotidesMIT1002_00662 and MIT1002_00663 are separated by 234 nucleotides MIT1002_00661: MIT1002_00661 - Phosphate starvation-inducible protein PsiH, at 720,505 to 721,902 _00661 MIT1002_00662: MIT1002_00662 - putative HTH-type transcriptional regulator YdcR, at 721,996 to 723,393 _00662 MIT1002_00663: MIT1002_00663 - cytochrome c oxidase accessory protein CcoG, at 723,628 to 725,001 _00663 Position (kb) 721 722 723 724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 721.063 kb on + strand, within MIT1002_00661at 721.113 kb on - strand, within MIT1002_00661at 721.152 kb on + strand, within MIT1002_00661at 721.160 kb on - strand, within MIT1002_00661at 721.218 kb on + strand, within MIT1002_00661at 721.219 kb on + strand, within MIT1002_00661at 721.266 kb on - strand, within MIT1002_00661at 721.382 kb on + strand, within MIT1002_00661at 721.407 kb on + strand, within MIT1002_00661at 721.605 kb on + strand, within MIT1002_00661at 721.700 kb on - strand, within MIT1002_00661at 721.700 kb on - strand, within MIT1002_00661at 721.758 kb on + strand, within MIT1002_00661at 721.764 kb on - strandat 721.787 kb on + strandat 721.849 kb on - strandat 721.854 kb on - strandat 721.941 kb on + strandat 721.960 kb on + strandat 721.960 kb on + strandat 721.973 kb on + strandat 722.150 kb on + strand, within MIT1002_00662at 722.168 kb on + strand, within MIT1002_00662at 722.195 kb on + strand, within MIT1002_00662at 722.221 kb on - strand, within MIT1002_00662at 722.272 kb on + strand, within MIT1002_00662at 722.282 kb on - strand, within MIT1002_00662at 722.289 kb on - strand, within MIT1002_00662at 722.291 kb on + strand, within MIT1002_00662at 722.335 kb on - strand, within MIT1002_00662at 722.360 kb on + strand, within MIT1002_00662at 722.426 kb on + strand, within MIT1002_00662at 722.454 kb on + strand, within MIT1002_00662at 722.454 kb on + strand, within MIT1002_00662at 722.478 kb on - strand, within MIT1002_00662at 722.496 kb on - strand, within MIT1002_00662at 722.541 kb on + strand, within MIT1002_00662at 722.541 kb on + strand, within MIT1002_00662at 722.562 kb on - strand, within MIT1002_00662at 722.644 kb on - strand, within MIT1002_00662at 722.654 kb on + strand, within MIT1002_00662at 722.662 kb on - strand, within MIT1002_00662at 722.664 kb on + strand, within MIT1002_00662at 722.704 kb on + strand, within MIT1002_00662at 722.718 kb on - strand, within MIT1002_00662at 722.751 kb on - strand, within MIT1002_00662at 722.799 kb on + strand, within MIT1002_00662at 722.804 kb on + strand, within MIT1002_00662at 722.807 kb on - strand, within MIT1002_00662at 722.807 kb on - strand, within MIT1002_00662at 722.807 kb on - strand, within MIT1002_00662at 722.838 kb on + strand, within MIT1002_00662at 722.838 kb on + strand, within MIT1002_00662at 722.839 kb on - strand, within MIT1002_00662at 722.846 kb on - strand, within MIT1002_00662at 722.861 kb on - strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.950 kb on - strand, within MIT1002_00662at 723.002 kb on - strand, within MIT1002_00662at 723.037 kb on + strand, within MIT1002_00662at 723.038 kb on - strand, within MIT1002_00662at 723.122 kb on - strand, within MIT1002_00662at 723.199 kb on + strand, within MIT1002_00662at 723.260 kb on - strandat 723.323 kb on + strandat 723.333 kb on + strandat 723.559 kb on + strandat 723.559 kb on + strandat 723.659 kb on - strandat 723.665 kb on - strandat 723.822 kb on - strand, within MIT1002_00663at 723.859 kb on + strand, within MIT1002_00663at 723.949 kb on + strand, within MIT1002_00663at 723.960 kb on + strand, within MIT1002_00663at 723.960 kb on + strand, within MIT1002_00663at 723.960 kb on + strand, within MIT1002_00663at 723.987 kb on + strand, within MIT1002_00663at 723.992 kb on + strand, within MIT1002_00663at 724.047 kb on + strand, within MIT1002_00663at 724.047 kb on + strand, within MIT1002_00663at 724.079 kb on + strand, within MIT1002_00663at 724.099 kb on - strand, within MIT1002_00663at 724.102 kb on + strand, within MIT1002_00663at 724.192 kb on + strand, within MIT1002_00663at 724.223 kb on - strand, within MIT1002_00663at 724.347 kb on - strand, within MIT1002_00663at 724.364 kb on + strand, within MIT1002_00663

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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721,063 + MIT1002_00661 0.40 +0.3
721,113 - MIT1002_00661 0.43 +0.6
721,152 + MIT1002_00661 0.46 +2.6
721,160 - MIT1002_00661 0.47 -0.2
721,218 + MIT1002_00661 0.51 -0.9
721,219 + MIT1002_00661 0.51 -0.2
721,266 - MIT1002_00661 0.54 -1.1
721,382 + MIT1002_00661 0.63 -0.0
721,407 + MIT1002_00661 0.65 +2.3
721,605 + MIT1002_00661 0.79 -0.2
721,700 - MIT1002_00661 0.85 +1.4
721,700 - MIT1002_00661 0.85 +0.8
721,758 + MIT1002_00661 0.90 -3.0
721,764 - -0.3
721,787 + +0.3
721,849 - -0.8
721,854 - -0.3
721,941 + +0.7
721,960 + +1.5
721,960 + +0.5
721,973 + +0.3
722,150 + MIT1002_00662 0.11 -2.5
722,168 + MIT1002_00662 0.12 -0.3
722,195 + MIT1002_00662 0.14 -1.5
722,221 - MIT1002_00662 0.16 +0.5
722,272 + MIT1002_00662 0.20 -1.1
722,282 - MIT1002_00662 0.20 +1.1
722,289 - MIT1002_00662 0.21 -0.9
722,291 + MIT1002_00662 0.21 -0.3
722,335 - MIT1002_00662 0.24 +0.8
722,360 + MIT1002_00662 0.26 -1.7
722,426 + MIT1002_00662 0.31 -0.1
722,454 + MIT1002_00662 0.33 -2.1
722,454 + MIT1002_00662 0.33 -0.5
722,478 - MIT1002_00662 0.34 +0.9
722,496 - MIT1002_00662 0.36 +0.1
722,541 + MIT1002_00662 0.39 -1.7
722,541 + MIT1002_00662 0.39 -0.1
722,562 - MIT1002_00662 0.40 +0.9
722,644 - MIT1002_00662 0.46 +0.1
722,654 + MIT1002_00662 0.47 -0.7
722,662 - MIT1002_00662 0.48 +0.6
722,664 + MIT1002_00662 0.48 -1.0
722,704 + MIT1002_00662 0.51 -2.3
722,718 - MIT1002_00662 0.52 -0.6
722,751 - MIT1002_00662 0.54 -1.0
722,799 + MIT1002_00662 0.57 -0.1
722,804 + MIT1002_00662 0.58 -0.1
722,807 - MIT1002_00662 0.58 -0.5
722,807 - MIT1002_00662 0.58 -0.1
722,807 - MIT1002_00662 0.58 +0.4
722,838 + MIT1002_00662 0.60 +0.1
722,838 + MIT1002_00662 0.60 -1.4
722,839 - MIT1002_00662 0.60 +0.3
722,846 - MIT1002_00662 0.61 -0.3
722,861 - MIT1002_00662 0.62 +0.4
722,937 + MIT1002_00662 0.67 -0.3
722,937 + MIT1002_00662 0.67 +0.7
722,937 + MIT1002_00662 0.67 +0.4
722,937 + MIT1002_00662 0.67 +0.5
722,945 - MIT1002_00662 0.68 -0.8
722,945 - MIT1002_00662 0.68 -1.7
722,945 - MIT1002_00662 0.68 -0.4
722,945 - MIT1002_00662 0.68 -1.0
722,945 - MIT1002_00662 0.68 +0.3
722,945 - MIT1002_00662 0.68 +0.5
722,945 - MIT1002_00662 0.68 -0.2
722,950 - MIT1002_00662 0.68 +0.5
723,002 - MIT1002_00662 0.72 -2.0
723,037 + MIT1002_00662 0.74 +0.5
723,038 - MIT1002_00662 0.75 -0.6
723,122 - MIT1002_00662 0.81 +0.7
723,199 + MIT1002_00662 0.86 +0.4
723,260 - +0.7
723,323 + -0.2
723,333 + +0.1
723,559 + +0.9
723,559 + +0.8
723,659 - +0.3
723,665 - +0.1
723,822 - MIT1002_00663 0.14 -0.0
723,859 + MIT1002_00663 0.17 +0.1
723,949 + MIT1002_00663 0.23 +0.0
723,960 + MIT1002_00663 0.24 +0.5
723,960 + MIT1002_00663 0.24 +0.6
723,960 + MIT1002_00663 0.24 -1.0
723,987 + MIT1002_00663 0.26 +0.3
723,992 + MIT1002_00663 0.26 +0.0
724,047 + MIT1002_00663 0.30 +0.4
724,047 + MIT1002_00663 0.30 +0.8
724,079 + MIT1002_00663 0.33 -1.2
724,099 - MIT1002_00663 0.34 -0.6
724,102 + MIT1002_00663 0.34 +0.6
724,192 + MIT1002_00663 0.41 +0.4
724,223 - MIT1002_00663 0.43 +1.1
724,347 - MIT1002_00663 0.52 -0.2
724,364 + MIT1002_00663 0.54 +0.8

Or see this region's nucleotide sequence