Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00534

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00533 and MIT1002_00534 are separated by 314 nucleotidesMIT1002_00534 and MIT1002_00535 are separated by 11 nucleotidesMIT1002_00535 and MIT1002_00536 are separated by 52 nucleotides MIT1002_00533: MIT1002_00533 - Adenylosuccinate synthetase, at 579,542 to 580,840 _00533 MIT1002_00534: MIT1002_00534 - Aldehyde dehydrogenase, at 581,155 to 582,561 _00534 MIT1002_00535: MIT1002_00535 - putative dioxygenase of extradiol dioxygenase family protein, at 582,573 to 582,989 _00535 MIT1002_00536: MIT1002_00536 - putative iron-regulated membrane protein, at 583,042 to 583,761 _00536 Position (kb) 581 582 583Strain fitness (log2 ratio) -3 -2 -1 0 1at 580.824 kb on + strandat 580.832 kb on - strandat 580.938 kb on + strandat 580.963 kb on + strandat 580.963 kb on + strandat 581.090 kb on - strandat 581.139 kb on - strandat 581.139 kb on - strandat 581.139 kb on - strandat 581.139 kb on - strandat 581.139 kb on - strandat 581.190 kb on - strandat 581.219 kb on + strandat 581.263 kb on - strandat 581.263 kb on - strandat 581.318 kb on + strand, within MIT1002_00534at 581.377 kb on + strand, within MIT1002_00534at 581.377 kb on + strand, within MIT1002_00534at 581.384 kb on + strand, within MIT1002_00534at 581.385 kb on - strand, within MIT1002_00534at 581.492 kb on + strand, within MIT1002_00534at 581.492 kb on + strand, within MIT1002_00534at 581.492 kb on + strand, within MIT1002_00534at 581.492 kb on + strand, within MIT1002_00534at 581.492 kb on + strand, within MIT1002_00534at 581.492 kb on + strand, within MIT1002_00534at 581.500 kb on - strand, within MIT1002_00534at 581.500 kb on - strand, within MIT1002_00534at 581.500 kb on - strand, within MIT1002_00534at 581.502 kb on + strand, within MIT1002_00534at 581.507 kb on + strand, within MIT1002_00534at 581.510 kb on - strand, within MIT1002_00534at 581.540 kb on - strand, within MIT1002_00534at 581.555 kb on - strand, within MIT1002_00534at 581.555 kb on - strand, within MIT1002_00534at 581.606 kb on - strand, within MIT1002_00534at 581.678 kb on - strand, within MIT1002_00534at 581.680 kb on + strand, within MIT1002_00534at 581.784 kb on - strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.813 kb on + strand, within MIT1002_00534at 581.821 kb on - strand, within MIT1002_00534at 581.821 kb on - strand, within MIT1002_00534at 581.821 kb on - strand, within MIT1002_00534at 581.821 kb on - strand, within MIT1002_00534at 581.821 kb on - strand, within MIT1002_00534at 581.861 kb on + strand, within MIT1002_00534at 581.890 kb on - strand, within MIT1002_00534at 581.890 kb on - strand, within MIT1002_00534at 581.936 kb on + strand, within MIT1002_00534at 582.139 kb on + strand, within MIT1002_00534at 582.154 kb on - strand, within MIT1002_00534at 582.154 kb on - strand, within MIT1002_00534at 582.171 kb on - strand, within MIT1002_00534at 582.205 kb on + strand, within MIT1002_00534at 582.205 kb on + strand, within MIT1002_00534at 582.213 kb on - strand, within MIT1002_00534at 582.223 kb on + strand, within MIT1002_00534at 582.258 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.271 kb on - strand, within MIT1002_00534at 582.271 kb on - strand, within MIT1002_00534at 582.344 kb on + strand, within MIT1002_00534at 582.346 kb on + strand, within MIT1002_00534at 582.359 kb on + strand, within MIT1002_00534at 582.359 kb on + strand, within MIT1002_00534at 582.369 kb on + strand, within MIT1002_00534at 582.369 kb on + strand, within MIT1002_00534at 582.369 kb on + strand, within MIT1002_00534at 582.377 kb on - strand, within MIT1002_00534at 582.377 kb on - strand, within MIT1002_00534at 582.388 kb on - strand, within MIT1002_00534at 582.536 kb on - strandat 582.629 kb on + strand, within MIT1002_00535at 582.637 kb on - strand, within MIT1002_00535at 582.641 kb on + strand, within MIT1002_00535at 582.649 kb on - strand, within MIT1002_00535at 582.660 kb on - strand, within MIT1002_00535at 582.692 kb on - strand, within MIT1002_00535at 582.721 kb on + strand, within MIT1002_00535at 582.729 kb on - strand, within MIT1002_00535at 582.729 kb on - strand, within MIT1002_00535at 582.729 kb on - strand, within MIT1002_00535at 582.736 kb on - strand, within MIT1002_00535at 582.788 kb on + strand, within MIT1002_00535at 582.798 kb on + strand, within MIT1002_00535at 582.798 kb on + strand, within MIT1002_00535at 582.806 kb on - strand, within MIT1002_00535at 582.830 kb on - strand, within MIT1002_00535at 582.975 kb on - strandat 582.999 kb on + strandat 582.999 kb on - strandat 583.027 kb on - strandat 583.029 kb on + strandat 583.037 kb on - strandat 583.040 kb on + strandat 583.091 kb on + strandat 583.100 kb on - strandat 583.142 kb on + strand, within MIT1002_00536at 583.241 kb on + strand, within MIT1002_00536at 583.261 kb on - strand, within MIT1002_00536at 583.320 kb on - strand, within MIT1002_00536at 583.320 kb on - strand, within MIT1002_00536at 583.322 kb on + strand, within MIT1002_00536at 583.383 kb on - strand, within MIT1002_00536at 583.401 kb on - strand, within MIT1002_00536at 583.410 kb on + strand, within MIT1002_00536at 583.502 kb on + strand, within MIT1002_00536at 583.522 kb on - strand, within MIT1002_00536

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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580,824 + -0.3
580,832 - -1.0
580,938 + -0.0
580,963 + -0.3
580,963 + -1.9
581,090 - +0.8
581,139 - -0.4
581,139 - -0.7
581,139 - -0.3
581,139 - -0.8
581,139 - -0.3
581,190 - -0.8
581,219 + -0.2
581,263 - +1.0
581,263 - -0.8
581,318 + MIT1002_00534 0.12 -1.4
581,377 + MIT1002_00534 0.16 -0.2
581,377 + MIT1002_00534 0.16 +1.4
581,384 + MIT1002_00534 0.16 -0.5
581,385 - MIT1002_00534 0.16 -2.3
581,492 + MIT1002_00534 0.24 -0.0
581,492 + MIT1002_00534 0.24 +0.1
581,492 + MIT1002_00534 0.24 +0.3
581,492 + MIT1002_00534 0.24 -0.8
581,492 + MIT1002_00534 0.24 +0.1
581,492 + MIT1002_00534 0.24 +1.1
581,500 - MIT1002_00534 0.25 -0.7
581,500 - MIT1002_00534 0.25 -2.6
581,500 - MIT1002_00534 0.25 +0.2
581,502 + MIT1002_00534 0.25 +1.3
581,507 + MIT1002_00534 0.25 -1.6
581,510 - MIT1002_00534 0.25 -1.5
581,540 - MIT1002_00534 0.27 +0.7
581,555 - MIT1002_00534 0.28 +0.4
581,555 - MIT1002_00534 0.28 -1.0
581,606 - MIT1002_00534 0.32 -0.7
581,678 - MIT1002_00534 0.37 -0.9
581,680 + MIT1002_00534 0.37 +0.3
581,784 - MIT1002_00534 0.45 -0.0
581,813 + MIT1002_00534 0.47 -2.1
581,813 + MIT1002_00534 0.47 -2.4
581,813 + MIT1002_00534 0.47 -0.3
581,813 + MIT1002_00534 0.47 +0.6
581,813 + MIT1002_00534 0.47 -0.7
581,813 + MIT1002_00534 0.47 +0.5
581,813 + MIT1002_00534 0.47 -0.5
581,813 + MIT1002_00534 0.47 -1.3
581,821 - MIT1002_00534 0.47 +0.3
581,821 - MIT1002_00534 0.47 -1.5
581,821 - MIT1002_00534 0.47 -0.4
581,821 - MIT1002_00534 0.47 +0.3
581,821 - MIT1002_00534 0.47 -0.2
581,861 + MIT1002_00534 0.50 +0.6
581,890 - MIT1002_00534 0.52 -0.6
581,890 - MIT1002_00534 0.52 +0.5
581,936 + MIT1002_00534 0.56 -1.1
582,139 + MIT1002_00534 0.70 -0.9
582,154 - MIT1002_00534 0.71 -0.8
582,154 - MIT1002_00534 0.71 -1.1
582,171 - MIT1002_00534 0.72 -0.2
582,205 + MIT1002_00534 0.75 -0.2
582,205 + MIT1002_00534 0.75 -1.3
582,213 - MIT1002_00534 0.75 -0.4
582,223 + MIT1002_00534 0.76 -1.4
582,258 + MIT1002_00534 0.78 +0.8
582,263 + MIT1002_00534 0.79 -0.4
582,263 + MIT1002_00534 0.79 -1.1
582,263 + MIT1002_00534 0.79 +0.1
582,263 + MIT1002_00534 0.79 -1.8
582,271 - MIT1002_00534 0.79 -0.2
582,271 - MIT1002_00534 0.79 -0.7
582,344 + MIT1002_00534 0.85 -0.2
582,346 + MIT1002_00534 0.85 -0.0
582,359 + MIT1002_00534 0.86 -2.3
582,359 + MIT1002_00534 0.86 -0.1
582,369 + MIT1002_00534 0.86 +0.7
582,369 + MIT1002_00534 0.86 +0.1
582,369 + MIT1002_00534 0.86 +0.2
582,377 - MIT1002_00534 0.87 +0.2
582,377 - MIT1002_00534 0.87 -0.8
582,388 - MIT1002_00534 0.88 -0.1
582,536 - +0.1
582,629 + MIT1002_00535 0.13 +1.1
582,637 - MIT1002_00535 0.15 -2.9
582,641 + MIT1002_00535 0.16 +0.1
582,649 - MIT1002_00535 0.18 +0.1
582,660 - MIT1002_00535 0.21 +0.6
582,692 - MIT1002_00535 0.29 +0.5
582,721 + MIT1002_00535 0.35 +0.5
582,729 - MIT1002_00535 0.37 +1.1
582,729 - MIT1002_00535 0.37 +0.1
582,729 - MIT1002_00535 0.37 +0.1
582,736 - MIT1002_00535 0.39 -2.4
582,788 + MIT1002_00535 0.52 +0.8
582,798 + MIT1002_00535 0.54 +0.8
582,798 + MIT1002_00535 0.54 -3.0
582,806 - MIT1002_00535 0.56 -2.4
582,830 - MIT1002_00535 0.62 +0.1
582,975 - -1.9
582,999 + -0.9
582,999 - +0.8
583,027 - +0.9
583,029 + -2.5
583,037 - -0.4
583,040 + +0.1
583,091 + +0.9
583,100 - +0.1
583,142 + MIT1002_00536 0.14 +0.4
583,241 + MIT1002_00536 0.28 +0.6
583,261 - MIT1002_00536 0.30 +0.1
583,320 - MIT1002_00536 0.39 -0.1
583,320 - MIT1002_00536 0.39 -1.1
583,322 + MIT1002_00536 0.39 -0.3
583,383 - MIT1002_00536 0.47 +1.4
583,401 - MIT1002_00536 0.50 -0.6
583,410 + MIT1002_00536 0.51 -0.2
583,502 + MIT1002_00536 0.64 +0.5
583,522 - MIT1002_00536 0.67 +1.1

Or see this region's nucleotide sequence