Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00524

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00522 and MIT1002_00523 are separated by 60 nucleotidesMIT1002_00523 and MIT1002_00524 are separated by 66 nucleotidesMIT1002_00524 and MIT1002_00525 are separated by 186 nucleotidesMIT1002_00525 and MIT1002_00526 are separated by 194 nucleotides MIT1002_00522: MIT1002_00522 - N5-carboxyaminoimidazole ribonucleotide synthase, at 568,772 to 569,908 _00522 MIT1002_00523: MIT1002_00523 - tRNA-Thr, at 569,969 to 570,044 _00523 MIT1002_00524: MIT1002_00524 - hypothetical protein, at 570,111 to 570,656 _00524 MIT1002_00525: MIT1002_00525 - DNA protection during starvation protein 2, at 570,843 to 571,316 _00525 MIT1002_00526: MIT1002_00526 - Soluble aldose sugar dehydrogenase YliI precursor, at 571,511 to 572,692 _00526 Position (kb) 570 571Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 569.157 kb on + strand, within MIT1002_00522at 569.332 kb on + strand, within MIT1002_00522at 569.364 kb on - strand, within MIT1002_00522at 569.366 kb on - strand, within MIT1002_00522at 569.366 kb on - strand, within MIT1002_00522at 569.398 kb on - strand, within MIT1002_00522at 569.449 kb on + strand, within MIT1002_00522at 569.479 kb on + strand, within MIT1002_00522at 569.480 kb on + strand, within MIT1002_00522at 569.488 kb on - strand, within MIT1002_00522at 569.515 kb on + strand, within MIT1002_00522at 569.523 kb on - strand, within MIT1002_00522at 569.576 kb on - strand, within MIT1002_00522at 569.724 kb on + strand, within MIT1002_00522at 569.732 kb on - strand, within MIT1002_00522at 569.738 kb on + strand, within MIT1002_00522at 569.738 kb on + strand, within MIT1002_00522at 569.858 kb on + strandat 569.866 kb on - strandat 570.089 kb on - strandat 570.178 kb on - strand, within MIT1002_00524at 570.279 kb on + strand, within MIT1002_00524at 570.279 kb on + strand, within MIT1002_00524at 570.293 kb on + strand, within MIT1002_00524at 570.294 kb on + strand, within MIT1002_00524at 570.323 kb on + strand, within MIT1002_00524at 570.333 kb on - strand, within MIT1002_00524at 570.338 kb on + strand, within MIT1002_00524at 570.363 kb on - strand, within MIT1002_00524at 570.493 kb on + strand, within MIT1002_00524at 570.536 kb on - strand, within MIT1002_00524at 570.549 kb on - strand, within MIT1002_00524at 570.564 kb on + strand, within MIT1002_00524at 570.589 kb on + strand, within MIT1002_00524at 570.604 kb on - strandat 570.719 kb on + strandat 570.826 kb on + strandat 570.828 kb on + strandat 570.834 kb on + strandat 570.842 kb on - strandat 571.007 kb on + strand, within MIT1002_00525at 571.007 kb on + strand, within MIT1002_00525at 571.007 kb on + strand, within MIT1002_00525at 571.007 kb on + strand, within MIT1002_00525at 571.012 kb on + strand, within MIT1002_00525at 571.012 kb on + strand, within MIT1002_00525at 571.015 kb on - strand, within MIT1002_00525at 571.015 kb on - strand, within MIT1002_00525at 571.015 kb on - strand, within MIT1002_00525at 571.074 kb on + strand, within MIT1002_00525at 571.084 kb on + strand, within MIT1002_00525at 571.092 kb on - strand, within MIT1002_00525at 571.092 kb on - strand, within MIT1002_00525at 571.121 kb on + strand, within MIT1002_00525at 571.130 kb on - strand, within MIT1002_00525at 571.205 kb on + strand, within MIT1002_00525at 571.213 kb on - strand, within MIT1002_00525at 571.215 kb on + strand, within MIT1002_00525at 571.235 kb on + strand, within MIT1002_00525at 571.241 kb on - strand, within MIT1002_00525at 571.305 kb on - strandat 571.308 kb on - strandat 571.371 kb on + strandat 571.379 kb on - strandat 571.379 kb on - strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.418 kb on - strandat 571.432 kb on + strandat 571.467 kb on - strandat 571.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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569,157 + MIT1002_00522 0.34 -4.5
569,332 + MIT1002_00522 0.49 -6.0
569,364 - MIT1002_00522 0.52 -1.0
569,366 - MIT1002_00522 0.52 -2.0
569,366 - MIT1002_00522 0.52 -3.5
569,398 - MIT1002_00522 0.55 -4.9
569,449 + MIT1002_00522 0.60 -5.1
569,479 + MIT1002_00522 0.62 -3.2
569,480 + MIT1002_00522 0.62 -2.8
569,488 - MIT1002_00522 0.63 -4.3
569,515 + MIT1002_00522 0.65 -6.9
569,523 - MIT1002_00522 0.66 -4.5
569,576 - MIT1002_00522 0.71 -4.0
569,724 + MIT1002_00522 0.84 -2.1
569,732 - MIT1002_00522 0.84 -1.3
569,738 + MIT1002_00522 0.85 -5.8
569,738 + MIT1002_00522 0.85 -7.2
569,858 + -7.6
569,866 - -2.6
570,089 - -0.8
570,178 - MIT1002_00524 0.12 -1.5
570,279 + MIT1002_00524 0.31 -0.4
570,279 + MIT1002_00524 0.31 -2.1
570,293 + MIT1002_00524 0.33 -1.3
570,294 + MIT1002_00524 0.34 -1.3
570,323 + MIT1002_00524 0.39 -0.7
570,333 - MIT1002_00524 0.41 -1.8
570,338 + MIT1002_00524 0.42 -0.7
570,363 - MIT1002_00524 0.46 -2.0
570,493 + MIT1002_00524 0.70 -1.5
570,536 - MIT1002_00524 0.78 -2.6
570,549 - MIT1002_00524 0.80 -1.7
570,564 + MIT1002_00524 0.83 -3.0
570,589 + MIT1002_00524 0.88 -0.3
570,604 - -2.4
570,719 + -0.6
570,826 + +0.2
570,828 + -4.3
570,834 + +0.4
570,842 - -1.3
571,007 + MIT1002_00525 0.35 -0.0
571,007 + MIT1002_00525 0.35 +1.6
571,007 + MIT1002_00525 0.35 -0.5
571,007 + MIT1002_00525 0.35 +1.0
571,012 + MIT1002_00525 0.36 +0.5
571,012 + MIT1002_00525 0.36 -0.2
571,015 - MIT1002_00525 0.36 -2.1
571,015 - MIT1002_00525 0.36 -0.4
571,015 - MIT1002_00525 0.36 +0.3
571,074 + MIT1002_00525 0.49 -0.3
571,084 + MIT1002_00525 0.51 +0.4
571,092 - MIT1002_00525 0.53 +0.8
571,092 - MIT1002_00525 0.53 -0.3
571,121 + MIT1002_00525 0.59 -0.1
571,130 - MIT1002_00525 0.61 +0.2
571,205 + MIT1002_00525 0.76 +0.3
571,213 - MIT1002_00525 0.78 -0.2
571,215 + MIT1002_00525 0.78 +0.4
571,235 + MIT1002_00525 0.83 -2.0
571,241 - MIT1002_00525 0.84 +0.4
571,305 - -0.2
571,308 - -0.8
571,371 + +1.2
571,379 - -0.1
571,379 - +0.2
571,405 + +0.3
571,405 + +0.1
571,405 + +1.1
571,405 + -0.9
571,405 + +0.4
571,405 + +0.3
571,413 - -1.7
571,413 - +0.5
571,413 - -0.6
571,413 - -0.0
571,413 - -0.8
571,413 - +0.2
571,418 - +0.2
571,432 + +1.5
571,467 - -0.4
571,548 - +0.0

Or see this region's nucleotide sequence