Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00414

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00413 and MIT1002_00414 are separated by 228 nucleotidesMIT1002_00414 and MIT1002_00415 are separated by 49 nucleotides MIT1002_00413: MIT1002_00413 - Extracellular ribonuclease precursor, at 445,361 to 447,001 _00413 MIT1002_00414: MIT1002_00414 - Bacillibactin transport regulator, at 447,230 to 447,949 _00414 MIT1002_00415: MIT1002_00415 - hypothetical protein, at 447,999 to 448,853 _00415 Position (kb) 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 446.233 kb on + strand, within MIT1002_00413at 446.306 kb on + strand, within MIT1002_00413at 446.325 kb on + strand, within MIT1002_00413at 446.340 kb on + strand, within MIT1002_00413at 446.383 kb on - strand, within MIT1002_00413at 446.515 kb on + strand, within MIT1002_00413at 446.532 kb on - strand, within MIT1002_00413at 446.546 kb on - strand, within MIT1002_00413at 446.556 kb on - strand, within MIT1002_00413at 446.573 kb on + strand, within MIT1002_00413at 446.573 kb on + strand, within MIT1002_00413at 446.581 kb on - strand, within MIT1002_00413at 446.581 kb on - strand, within MIT1002_00413at 446.658 kb on + strand, within MIT1002_00413at 446.703 kb on + strand, within MIT1002_00413at 446.713 kb on + strand, within MIT1002_00413at 446.713 kb on + strand, within MIT1002_00413at 446.713 kb on + strand, within MIT1002_00413at 446.721 kb on - strand, within MIT1002_00413at 446.721 kb on - strand, within MIT1002_00413at 446.721 kb on - strand, within MIT1002_00413at 446.793 kb on + strand, within MIT1002_00413at 446.830 kb on + strand, within MIT1002_00413at 446.878 kb on - strandat 446.928 kb on - strandat 446.930 kb on + strandat 446.930 kb on - strandat 446.938 kb on - strandat 446.938 kb on - strandat 446.957 kb on + strandat 447.056 kb on + strandat 447.064 kb on - strandat 447.137 kb on + strandat 447.145 kb on - strandat 447.191 kb on + strandat 447.213 kb on + strandat 447.248 kb on - strandat 447.265 kb on + strandat 447.265 kb on + strandat 447.267 kb on + strandat 447.304 kb on + strand, within MIT1002_00414at 447.312 kb on - strand, within MIT1002_00414at 447.317 kb on - strand, within MIT1002_00414at 447.385 kb on + strand, within MIT1002_00414at 447.391 kb on - strand, within MIT1002_00414at 447.393 kb on - strand, within MIT1002_00414at 447.510 kb on + strand, within MIT1002_00414at 447.518 kb on - strand, within MIT1002_00414at 447.518 kb on - strand, within MIT1002_00414at 447.574 kb on - strand, within MIT1002_00414at 447.574 kb on - strand, within MIT1002_00414at 447.664 kb on - strand, within MIT1002_00414at 447.671 kb on - strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.698 kb on - strand, within MIT1002_00414at 447.698 kb on - strand, within MIT1002_00414at 447.698 kb on - strand, within MIT1002_00414at 447.700 kb on + strand, within MIT1002_00414at 447.708 kb on - strand, within MIT1002_00414at 447.724 kb on + strand, within MIT1002_00414at 447.739 kb on + strand, within MIT1002_00414at 447.789 kb on - strand, within MIT1002_00414at 447.811 kb on + strand, within MIT1002_00414at 447.811 kb on + strand, within MIT1002_00414at 447.850 kb on + strand, within MIT1002_00414at 447.855 kb on - strand, within MIT1002_00414at 447.860 kb on - strand, within MIT1002_00414at 447.860 kb on - strand, within MIT1002_00414at 447.860 kb on - strand, within MIT1002_00414at 447.932 kb on - strandat 447.932 kb on - strandat 447.967 kb on - strandat 447.973 kb on - strandat 447.974 kb on - strandat 448.156 kb on - strand, within MIT1002_00415at 448.205 kb on + strand, within MIT1002_00415at 448.213 kb on - strand, within MIT1002_00415at 448.255 kb on - strand, within MIT1002_00415at 448.288 kb on + strand, within MIT1002_00415at 448.290 kb on + strand, within MIT1002_00415at 448.290 kb on + strand, within MIT1002_00415at 448.290 kb on + strand, within MIT1002_00415at 448.363 kb on + strand, within MIT1002_00415at 448.375 kb on + strand, within MIT1002_00415at 448.383 kb on - strand, within MIT1002_00415at 448.383 kb on - strand, within MIT1002_00415at 448.412 kb on - strand, within MIT1002_00415at 448.512 kb on - strand, within MIT1002_00415at 448.569 kb on - strand, within MIT1002_00415at 448.569 kb on - strand, within MIT1002_00415at 448.574 kb on - strand, within MIT1002_00415at 448.579 kb on + strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.586 kb on + strand, within MIT1002_00415at 448.678 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on - strand, within MIT1002_00415at 448.709 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.766 kb on + strand, within MIT1002_00415at 448.766 kb on + strand, within MIT1002_00415at 448.774 kb on - strandat 448.779 kb on - strandat 448.821 kb on + strandat 448.826 kb on - strandat 448.878 kb on + strandat 448.878 kb on + strandat 448.878 kb on + strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.896 kb on + strandat 448.937 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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446,233 + MIT1002_00413 0.53 -0.1
446,306 + MIT1002_00413 0.58 -0.8
446,325 + MIT1002_00413 0.59 -1.8
446,340 + MIT1002_00413 0.60 +0.3
446,383 - MIT1002_00413 0.62 -0.9
446,515 + MIT1002_00413 0.70 -2.2
446,532 - MIT1002_00413 0.71 +0.6
446,546 - MIT1002_00413 0.72 +0.7
446,556 - MIT1002_00413 0.73 +1.4
446,573 + MIT1002_00413 0.74 -0.7
446,573 + MIT1002_00413 0.74 +0.9
446,581 - MIT1002_00413 0.74 +0.9
446,581 - MIT1002_00413 0.74 +0.6
446,658 + MIT1002_00413 0.79 -0.6
446,703 + MIT1002_00413 0.82 -0.2
446,713 + MIT1002_00413 0.82 -0.3
446,713 + MIT1002_00413 0.82 -0.5
446,713 + MIT1002_00413 0.82 -0.7
446,721 - MIT1002_00413 0.83 +0.3
446,721 - MIT1002_00413 0.83 -1.2
446,721 - MIT1002_00413 0.83 -1.1
446,793 + MIT1002_00413 0.87 +1.8
446,830 + MIT1002_00413 0.90 +0.6
446,878 - -0.5
446,928 - -0.5
446,930 + +0.5
446,930 - -0.3
446,938 - +0.5
446,938 - -0.4
446,957 + +0.0
447,056 + +0.4
447,064 - -0.8
447,137 + -0.0
447,145 - +1.2
447,191 + +0.2
447,213 + -2.6
447,248 - +1.2
447,265 + +0.6
447,265 + -3.5
447,267 + +0.5
447,304 + MIT1002_00414 0.10 -1.2
447,312 - MIT1002_00414 0.11 -4.2
447,317 - MIT1002_00414 0.12 +0.4
447,385 + MIT1002_00414 0.22 +1.0
447,391 - MIT1002_00414 0.22 +0.5
447,393 - MIT1002_00414 0.23 +0.8
447,510 + MIT1002_00414 0.39 +0.9
447,518 - MIT1002_00414 0.40 +0.4
447,518 - MIT1002_00414 0.40 +0.1
447,574 - MIT1002_00414 0.48 -0.1
447,574 - MIT1002_00414 0.48 +2.5
447,664 - MIT1002_00414 0.60 -0.1
447,671 - MIT1002_00414 0.61 +1.1
447,690 + MIT1002_00414 0.64 +0.1
447,690 + MIT1002_00414 0.64 +0.7
447,690 + MIT1002_00414 0.64 -0.0
447,690 + MIT1002_00414 0.64 +0.5
447,698 - MIT1002_00414 0.65 +0.3
447,698 - MIT1002_00414 0.65 +0.5
447,698 - MIT1002_00414 0.65 -0.9
447,700 + MIT1002_00414 0.65 +0.3
447,708 - MIT1002_00414 0.66 -0.8
447,724 + MIT1002_00414 0.69 +0.7
447,739 + MIT1002_00414 0.71 -0.9
447,789 - MIT1002_00414 0.78 -0.1
447,811 + MIT1002_00414 0.81 +0.1
447,811 + MIT1002_00414 0.81 +0.3
447,850 + MIT1002_00414 0.86 +0.3
447,855 - MIT1002_00414 0.87 +0.1
447,860 - MIT1002_00414 0.88 +0.7
447,860 - MIT1002_00414 0.88 +0.1
447,860 - MIT1002_00414 0.88 +0.3
447,932 - -0.0
447,932 - +0.5
447,967 - -0.4
447,973 - -0.2
447,974 - +0.3
448,156 - MIT1002_00415 0.18 +0.3
448,205 + MIT1002_00415 0.24 -0.6
448,213 - MIT1002_00415 0.25 -1.7
448,255 - MIT1002_00415 0.30 +0.5
448,288 + MIT1002_00415 0.34 -1.4
448,290 + MIT1002_00415 0.34 -0.3
448,290 + MIT1002_00415 0.34 +0.2
448,290 + MIT1002_00415 0.34 -0.7
448,363 + MIT1002_00415 0.43 +0.2
448,375 + MIT1002_00415 0.44 -1.7
448,383 - MIT1002_00415 0.45 +1.2
448,383 - MIT1002_00415 0.45 +0.9
448,412 - MIT1002_00415 0.48 -0.9
448,512 - MIT1002_00415 0.60 -0.2
448,569 - MIT1002_00415 0.67 +0.1
448,569 - MIT1002_00415 0.67 +0.1
448,574 - MIT1002_00415 0.67 -1.0
448,579 + MIT1002_00415 0.68 -0.0
448,579 - MIT1002_00415 0.68 +0.1
448,579 - MIT1002_00415 0.68 +0.1
448,579 - MIT1002_00415 0.68 +1.4
448,586 + MIT1002_00415 0.69 -0.2
448,678 + MIT1002_00415 0.79 -0.1
448,706 + MIT1002_00415 0.83 +0.8
448,706 + MIT1002_00415 0.83 -2.0
448,706 + MIT1002_00415 0.83 -1.2
448,706 - MIT1002_00415 0.83 -0.5
448,709 - MIT1002_00415 0.83 +0.7
448,714 - MIT1002_00415 0.84 -0.4
448,714 - MIT1002_00415 0.84 -2.1
448,714 - MIT1002_00415 0.84 +0.5
448,714 - MIT1002_00415 0.84 +0.2
448,714 - MIT1002_00415 0.84 +1.6
448,766 + MIT1002_00415 0.90 +1.3
448,766 + MIT1002_00415 0.90 +0.5
448,774 - -0.3
448,779 - +0.3
448,821 + +1.3
448,826 - +1.1
448,878 + -1.5
448,878 + +0.3
448,878 + +0.3
448,886 - +1.0
448,886 - -1.8
448,886 - -0.2
448,886 - -0.7
448,896 + -0.5
448,937 + +0.3

Or see this region's nucleotide sequence