Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00187

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00186 and MIT1002_00187 are separated by 328 nucleotidesMIT1002_00187 and MIT1002_00188 are separated by 172 nucleotides MIT1002_00186: MIT1002_00186 - Mgl repressor and galactose ultrainduction factor, at 202,127 to 203,128 _00186 MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476 _00187 MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704 _00188 Position (kb) 203 204 205Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 202.458 kb on + strand, within MIT1002_00186at 202.462 kb on - strand, within MIT1002_00186at 202.505 kb on + strand, within MIT1002_00186at 202.538 kb on - strand, within MIT1002_00186at 202.540 kb on + strand, within MIT1002_00186at 202.560 kb on - strand, within MIT1002_00186at 202.605 kb on - strand, within MIT1002_00186at 202.616 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.717 kb on - strand, within MIT1002_00186at 202.746 kb on - strand, within MIT1002_00186at 202.763 kb on - strand, within MIT1002_00186at 202.768 kb on - strand, within MIT1002_00186at 202.776 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.845 kb on - strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.940 kb on + strand, within MIT1002_00186at 202.986 kb on - strand, within MIT1002_00186at 203.047 kb on + strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.235 kb on - strandat 203.265 kb on + strandat 203.292 kb on + strandat 203.321 kb on - strandat 203.358 kb on - strandat 203.509 kb on + strandat 203.531 kb on + strandat 203.531 kb on + strandat 203.539 kb on + strandat 203.544 kb on + strandat 203.614 kb on - strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.639 kb on + strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.644 kb on + strand, within MIT1002_00187at 203.647 kb on - strand, within MIT1002_00187at 203.689 kb on - strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.725 kb on + strand, within MIT1002_00187at 203.728 kb on - strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.771 kb on - strand, within MIT1002_00187at 203.798 kb on + strand, within MIT1002_00187at 203.806 kb on - strand, within MIT1002_00187at 203.827 kb on - strand, within MIT1002_00187at 203.858 kb on - strand, within MIT1002_00187at 203.868 kb on - strand, within MIT1002_00187at 203.871 kb on + strand, within MIT1002_00187at 203.980 kb on + strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.165 kb on - strand, within MIT1002_00187at 204.195 kb on + strand, within MIT1002_00187at 204.202 kb on - strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.220 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.244 kb on + strand, within MIT1002_00187at 204.272 kb on - strand, within MIT1002_00187at 204.310 kb on - strand, within MIT1002_00187at 204.325 kb on - strand, within MIT1002_00187at 204.350 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.358 kb on - strand, within MIT1002_00187at 204.627 kb on + strandat 204.639 kb on - strandat 204.659 kb on + strandat 204.666 kb on - strandat 204.698 kb on - strandat 204.698 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.723 kb on - strandat 204.843 kb on + strand, within MIT1002_00188at 204.843 kb on + strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.893 kb on + strand, within MIT1002_00188at 204.901 kb on - strand, within MIT1002_00188at 204.918 kb on - strand, within MIT1002_00188at 204.965 kb on - strand, within MIT1002_00188at 205.061 kb on + strand, within MIT1002_00188at 205.096 kb on - strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.203 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on - strand, within MIT1002_00188at 205.245 kb on + strand, within MIT1002_00188at 205.305 kb on + strand, within MIT1002_00188at 205.323 kb on - strand, within MIT1002_00188at 205.356 kb on - strand, within MIT1002_00188

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
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202,458 + MIT1002_00186 0.33 +2.0
202,462 - MIT1002_00186 0.33 +4.5
202,505 + MIT1002_00186 0.38 +4.6
202,538 - MIT1002_00186 0.41 +3.4
202,540 + MIT1002_00186 0.41 +3.4
202,560 - MIT1002_00186 0.43 +3.6
202,605 - MIT1002_00186 0.48 +3.3
202,616 + MIT1002_00186 0.49 +3.4
202,709 + MIT1002_00186 0.58 +2.7
202,709 + MIT1002_00186 0.58 +3.9
202,717 - MIT1002_00186 0.59 +3.2
202,746 - MIT1002_00186 0.62 +3.3
202,763 - MIT1002_00186 0.63 +3.3
202,768 - MIT1002_00186 0.64 +3.2
202,776 - MIT1002_00186 0.65 +3.6
202,807 - MIT1002_00186 0.68 -4.4
202,807 - MIT1002_00186 0.68 +4.1
202,845 - MIT1002_00186 0.72 +5.1
202,895 + MIT1002_00186 0.77 +3.5
202,895 + MIT1002_00186 0.77 +0.7
202,903 - MIT1002_00186 0.77 +3.3
202,903 - MIT1002_00186 0.77 +2.9
202,940 + MIT1002_00186 0.81 +4.0
202,986 - MIT1002_00186 0.86 +2.7
203,047 + +3.9
203,055 - +4.0
203,055 - +4.1
203,055 - +3.8
203,055 - +3.8
203,068 + +2.5
203,068 + +3.8
203,068 + +4.7
203,068 + +3.0
203,076 - +4.6
203,076 - +3.0
203,076 - +3.6
203,235 - +0.1
203,265 + +0.4
203,292 + +1.0
203,321 - +0.3
203,358 - +0.5
203,509 + +3.3
203,531 + +3.1
203,531 + +3.2
203,539 + +3.4
203,544 + +3.7
203,614 - MIT1002_00187 0.15 +3.2
203,634 + MIT1002_00187 0.17 +2.8
203,634 + MIT1002_00187 0.17 +3.5
203,634 + MIT1002_00187 0.17 +3.2
203,634 + MIT1002_00187 0.17 +3.3
203,639 + MIT1002_00187 0.18 +3.6
203,642 - MIT1002_00187 0.18 +3.1
203,642 - MIT1002_00187 0.18 +2.8
203,642 - MIT1002_00187 0.18 +4.0
203,644 + MIT1002_00187 0.18 +3.8
203,647 - MIT1002_00187 0.19 +3.2
203,689 - MIT1002_00187 0.23 +3.5
203,720 + MIT1002_00187 0.26 +2.9
203,720 + MIT1002_00187 0.26 +3.4
203,725 + MIT1002_00187 0.26 +3.4
203,728 - MIT1002_00187 0.27 +3.1
203,730 + MIT1002_00187 0.27 +3.1
203,730 + MIT1002_00187 0.27 +2.9
203,730 + MIT1002_00187 0.27 +3.5
203,738 - MIT1002_00187 0.28 +5.2
203,738 - MIT1002_00187 0.28 +3.4
203,738 - MIT1002_00187 0.28 +3.3
203,738 - MIT1002_00187 0.28 +2.8
203,771 - MIT1002_00187 0.31 +3.6
203,798 + MIT1002_00187 0.33 +4.0
203,806 - MIT1002_00187 0.34 +3.8
203,827 - MIT1002_00187 0.36 +2.9
203,858 - MIT1002_00187 0.39 +3.4
203,868 - MIT1002_00187 0.40 +4.5
203,871 + MIT1002_00187 0.41 +3.3
203,980 + MIT1002_00187 0.51 +3.2
204,034 - MIT1002_00187 0.57 +2.6
204,034 - MIT1002_00187 0.57 +4.2
204,165 - MIT1002_00187 0.69 +3.6
204,195 + MIT1002_00187 0.72 +2.3
204,202 - MIT1002_00187 0.73 +4.2
204,214 + MIT1002_00187 0.74 +3.5
204,214 + MIT1002_00187 0.74 +4.5
204,214 + MIT1002_00187 0.74 +3.2
204,214 + MIT1002_00187 0.74 +2.1
204,220 - MIT1002_00187 0.75 +2.9
204,222 - MIT1002_00187 0.75 +3.1
204,222 - MIT1002_00187 0.75 +3.5
204,222 - MIT1002_00187 0.75 +3.4
204,222 - MIT1002_00187 0.75 +4.3
204,240 - MIT1002_00187 0.77 +2.6
204,240 - MIT1002_00187 0.77 +3.3
204,244 + MIT1002_00187 0.77 +3.2
204,272 - MIT1002_00187 0.80 +4.3
204,310 - MIT1002_00187 0.84 +3.2
204,325 - MIT1002_00187 0.85 +2.8
204,350 + MIT1002_00187 0.88 +3.3
204,357 + MIT1002_00187 0.88 +3.3
204,357 + MIT1002_00187 0.88 +4.7
204,358 - MIT1002_00187 0.88 +5.0
204,627 + -0.6
204,639 - -0.6
204,659 + -5.7
204,666 - -3.8
204,698 - -4.8
204,698 - -3.6
204,715 + -4.8
204,715 + -2.1
204,723 - -5.5
204,843 + MIT1002_00188 0.18 -3.6
204,843 + MIT1002_00188 0.18 -5.3
204,851 - MIT1002_00188 0.19 -4.6
204,851 - MIT1002_00188 0.19 -6.1
204,893 + MIT1002_00188 0.23 -3.9
204,901 - MIT1002_00188 0.24 -2.2
204,918 - MIT1002_00188 0.25 -2.6
204,965 - MIT1002_00188 0.30 -4.1
205,061 + MIT1002_00188 0.39 -4.9
205,096 - MIT1002_00188 0.42 -6.2
205,127 + MIT1002_00188 0.45 -3.9
205,127 + MIT1002_00188 0.45 -4.1
205,135 - MIT1002_00188 0.46 -5.7
205,135 - MIT1002_00188 0.46 -2.5
205,203 + MIT1002_00188 0.52 -1.5
205,240 + MIT1002_00188 0.56 -2.7
205,240 + MIT1002_00188 0.56 -5.8
205,240 - MIT1002_00188 0.56 -5.2
205,245 + MIT1002_00188 0.56 -3.5
205,305 + MIT1002_00188 0.62 -6.9
205,323 - MIT1002_00188 0.64 -4.9
205,356 - MIT1002_00188 0.67 -3.2

Or see this region's nucleotide sequence