Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00111 and MIT1002_00112 overlap by 8 nucleotides MIT1002_00112 and MIT1002_00113 are separated by 9 nucleotides MIT1002_00113 and MIT1002_00114 are separated by 431 nucleotides
MIT1002_00111: MIT1002_00111 - ATP-dependent DNA helicase RecG, at 119,398 to 121,470
_00111
MIT1002_00112: MIT1002_00112 - Ribosomal RNA small subunit methyltransferase J, at 121,463 to 122,239
_00112
MIT1002_00113: MIT1002_00113 - Putative peroxiredoxin, at 122,249 to 122,722
_00113
MIT1002_00114: MIT1002_00114 - hypothetical protein, at 123,154 to 123,963
_00114
Position (kb) 122
123 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 121.506 kb on - strand at 121.517 kb on + strand at 121.577 kb on - strand, within MIT1002_00112 at 121.577 kb on - strand, within MIT1002_00112 at 121.601 kb on + strand, within MIT1002_00112 at 121.613 kb on + strand, within MIT1002_00112 at 121.613 kb on + strand, within MIT1002_00112 at 121.661 kb on - strand, within MIT1002_00112 at 121.749 kb on - strand, within MIT1002_00112 at 121.781 kb on - strand, within MIT1002_00112 at 121.791 kb on + strand, within MIT1002_00112 at 121.792 kb on - strand, within MIT1002_00112 at 121.792 kb on - strand, within MIT1002_00112 at 121.792 kb on - strand, within MIT1002_00112 at 121.895 kb on - strand, within MIT1002_00112 at 121.900 kb on - strand, within MIT1002_00112 at 121.952 kb on - strand, within MIT1002_00112 at 122.095 kb on + strand, within MIT1002_00112 at 122.105 kb on + strand, within MIT1002_00112 at 122.127 kb on + strand, within MIT1002_00112 at 122.149 kb on + strand, within MIT1002_00112 at 122.151 kb on + strand, within MIT1002_00112 at 122.151 kb on + strand, within MIT1002_00112 at 122.151 kb on + strand, within MIT1002_00112 at 122.151 kb on + strand, within MIT1002_00112 at 122.151 kb on + strand, within MIT1002_00112 at 122.151 kb on + strand, within MIT1002_00112 at 122.158 kb on + strand, within MIT1002_00112 at 122.159 kb on - strand, within MIT1002_00112 at 122.159 kb on - strand, within MIT1002_00112 at 122.159 kb on - strand, within MIT1002_00112 at 122.179 kb on - strand at 122.356 kb on + strand, within MIT1002_00113 at 122.364 kb on - strand, within MIT1002_00113 at 122.374 kb on - strand, within MIT1002_00113 at 122.388 kb on + strand, within MIT1002_00113 at 122.412 kb on + strand, within MIT1002_00113 at 122.447 kb on + strand, within MIT1002_00113 at 122.503 kb on + strand, within MIT1002_00113 at 122.587 kb on - strand, within MIT1002_00113 at 122.603 kb on + strand, within MIT1002_00113 at 122.617 kb on + strand, within MIT1002_00113 at 122.622 kb on + strand, within MIT1002_00113 at 122.622 kb on + strand, within MIT1002_00113 at 122.622 kb on + strand, within MIT1002_00113 at 122.630 kb on - strand, within MIT1002_00113 at 122.630 kb on - strand, within MIT1002_00113 at 122.724 kb on - strand at 122.762 kb on - strand at 122.850 kb on - strand at 122.857 kb on + strand at 122.865 kb on - strand at 122.903 kb on + strand at 122.947 kb on - strand at 122.988 kb on + strand at 123.047 kb on + strand at 123.214 kb on + strand at 123.298 kb on + strand, within MIT1002_00114 at 123.301 kb on + strand, within MIT1002_00114 at 123.306 kb on - strand, within MIT1002_00114 at 123.528 kb on - strand, within MIT1002_00114
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 4 remove 121,506 - -0.9 121,517 + -0.5 121,577 - MIT1002_00112 0.15 -1.3 121,577 - MIT1002_00112 0.15 -1.9 121,601 + MIT1002_00112 0.18 +1.2 121,613 + MIT1002_00112 0.19 +0.6 121,613 + MIT1002_00112 0.19 +0.1 121,661 - MIT1002_00112 0.25 -0.3 121,749 - MIT1002_00112 0.37 +1.1 121,781 - MIT1002_00112 0.41 +0.3 121,791 + MIT1002_00112 0.42 -0.5 121,792 - MIT1002_00112 0.42 -0.6 121,792 - MIT1002_00112 0.42 +1.5 121,792 - MIT1002_00112 0.42 -1.4 121,895 - MIT1002_00112 0.56 +0.3 121,900 - MIT1002_00112 0.56 -0.1 121,952 - MIT1002_00112 0.63 -3.1 122,095 + MIT1002_00112 0.81 -2.0 122,105 + MIT1002_00112 0.83 +0.0 122,127 + MIT1002_00112 0.85 -0.6 122,149 + MIT1002_00112 0.88 -4.8 122,151 + MIT1002_00112 0.89 -0.6 122,151 + MIT1002_00112 0.89 -1.0 122,151 + MIT1002_00112 0.89 +0.4 122,151 + MIT1002_00112 0.89 -0.7 122,151 + MIT1002_00112 0.89 +0.5 122,151 + MIT1002_00112 0.89 +0.3 122,158 + MIT1002_00112 0.89 -0.6 122,159 - MIT1002_00112 0.90 -1.4 122,159 - MIT1002_00112 0.90 -0.6 122,159 - MIT1002_00112 0.90 -4.8 122,179 - -2.3 122,356 + MIT1002_00113 0.23 -3.7 122,364 - MIT1002_00113 0.24 -4.0 122,374 - MIT1002_00113 0.26 -5.3 122,388 + MIT1002_00113 0.29 -3.6 122,412 + MIT1002_00113 0.34 -6.4 122,447 + MIT1002_00113 0.42 -5.5 122,503 + MIT1002_00113 0.54 -5.3 122,587 - MIT1002_00113 0.71 -5.6 122,603 + MIT1002_00113 0.75 -4.9 122,617 + MIT1002_00113 0.78 -4.9 122,622 + MIT1002_00113 0.79 -5.1 122,622 + MIT1002_00113 0.79 -5.8 122,622 + MIT1002_00113 0.79 -4.7 122,630 - MIT1002_00113 0.80 -2.6 122,630 - MIT1002_00113 0.80 -2.0 122,724 - -3.7 122,762 - -2.3 122,850 - -0.3 122,857 + -0.2 122,865 - -0.4 122,903 + +0.9 122,947 - -0.0 122,988 + -0.9 123,047 + -1.0 123,214 + -2.1 123,298 + MIT1002_00114 0.18 -0.6 123,301 + MIT1002_00114 0.18 -2.2 123,306 - MIT1002_00114 0.19 -0.6 123,528 - MIT1002_00114 0.46 -2.0
Or see this region's nucleotide sequence