Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05605

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05600 and LRK53_RS05605 are separated by 123 nucleotidesLRK53_RS05605 and LRK53_RS05610 are separated by 23 nucleotides LRK53_RS05600: LRK53_RS05600 - valine--tRNA ligase, at 1,304,528 to 1,307,491 _RS05600 LRK53_RS05605: LRK53_RS05605 - DUF3147 family protein, at 1,307,615 to 1,307,965 _RS05605 LRK53_RS05610: LRK53_RS05610 - uroporphyrinogen decarboxylase, at 1,307,989 to 1,309,062 _RS05610 Position (kb) 1307 1308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1307.530 kb on - strandat 1307.530 kb on - strandat 1307.530 kb on - strandat 1307.530 kb on - strandat 1307.537 kb on - strandat 1307.537 kb on - strandat 1307.537 kb on - strandat 1307.537 kb on - strandat 1307.537 kb on - strandat 1307.537 kb on - strandat 1307.550 kb on + strandat 1307.551 kb on - strandat 1307.551 kb on - strandat 1307.617 kb on - strandat 1307.673 kb on - strand, within LRK53_RS05605at 1307.673 kb on - strand, within LRK53_RS05605at 1307.673 kb on - strand, within LRK53_RS05605at 1307.673 kb on - strand, within LRK53_RS05605at 1307.673 kb on - strand, within LRK53_RS05605at 1307.726 kb on + strand, within LRK53_RS05605at 1307.726 kb on + strand, within LRK53_RS05605at 1307.726 kb on + strand, within LRK53_RS05605at 1307.726 kb on + strand, within LRK53_RS05605at 1307.726 kb on + strand, within LRK53_RS05605at 1307.726 kb on + strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.727 kb on - strand, within LRK53_RS05605at 1307.729 kb on + strand, within LRK53_RS05605at 1307.729 kb on + strand, within LRK53_RS05605at 1307.729 kb on + strand, within LRK53_RS05605at 1307.729 kb on + strand, within LRK53_RS05605at 1307.729 kb on + strand, within LRK53_RS05605at 1307.730 kb on - strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.769 kb on + strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.770 kb on - strand, within LRK53_RS05605at 1307.781 kb on + strand, within LRK53_RS05605at 1307.781 kb on + strand, within LRK53_RS05605at 1307.781 kb on + strand, within LRK53_RS05605at 1307.781 kb on + strand, within LRK53_RS05605at 1307.781 kb on + strand, within LRK53_RS05605at 1307.781 kb on + strand, within LRK53_RS05605at 1307.782 kb on - strand, within LRK53_RS05605at 1307.782 kb on - strand, within LRK53_RS05605at 1307.782 kb on - strand, within LRK53_RS05605at 1307.782 kb on - strand, within LRK53_RS05605at 1307.782 kb on - strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.826 kb on + strand, within LRK53_RS05605at 1307.827 kb on - strand, within LRK53_RS05605at 1307.827 kb on - strand, within LRK53_RS05605at 1307.827 kb on - strand, within LRK53_RS05605at 1307.827 kb on - strand, within LRK53_RS05605at 1307.827 kb on - strand, within LRK53_RS05605at 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.943 kb on + strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.944 kb on - strandat 1307.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Aluminum chloride 1mM
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1,307,530 - -0.7
1,307,530 - +0.6
1,307,530 - -1.7
1,307,530 - -1.0
1,307,537 - +1.0
1,307,537 - -1.3
1,307,537 - -1.4
1,307,537 - -0.9
1,307,537 - +0.4
1,307,537 - +0.7
1,307,550 + -1.3
1,307,551 - -1.5
1,307,551 - -2.9
1,307,617 - +0.9
1,307,673 - LRK53_RS05605 0.17 -0.3
1,307,673 - LRK53_RS05605 0.17 -1.0
1,307,673 - LRK53_RS05605 0.17 -0.9
1,307,673 - LRK53_RS05605 0.17 -0.4
1,307,673 - LRK53_RS05605 0.17 +1.0
1,307,726 + LRK53_RS05605 0.32 -1.1
1,307,726 + LRK53_RS05605 0.32 +0.4
1,307,726 + LRK53_RS05605 0.32 +0.4
1,307,726 + LRK53_RS05605 0.32 -0.4
1,307,726 + LRK53_RS05605 0.32 -0.5
1,307,726 + LRK53_RS05605 0.32 +1.3
1,307,727 - LRK53_RS05605 0.32 -1.8
1,307,727 - LRK53_RS05605 0.32 -1.2
1,307,727 - LRK53_RS05605 0.32 -0.8
1,307,727 - LRK53_RS05605 0.32 -1.6
1,307,727 - LRK53_RS05605 0.32 -0.6
1,307,727 - LRK53_RS05605 0.32 +0.8
1,307,727 - LRK53_RS05605 0.32 -3.9
1,307,727 - LRK53_RS05605 0.32 -0.6
1,307,729 + LRK53_RS05605 0.32 +0.3
1,307,729 + LRK53_RS05605 0.32 -0.2
1,307,729 + LRK53_RS05605 0.32 -0.8
1,307,729 + LRK53_RS05605 0.32 +0.3
1,307,729 + LRK53_RS05605 0.32 +0.4
1,307,730 - LRK53_RS05605 0.33 -0.5
1,307,769 + LRK53_RS05605 0.44 -1.0
1,307,769 + LRK53_RS05605 0.44 -2.3
1,307,769 + LRK53_RS05605 0.44 -0.0
1,307,769 + LRK53_RS05605 0.44 +0.3
1,307,769 + LRK53_RS05605 0.44 +1.2
1,307,769 + LRK53_RS05605 0.44 -0.7
1,307,769 + LRK53_RS05605 0.44 -2.2
1,307,769 + LRK53_RS05605 0.44 -0.3
1,307,769 + LRK53_RS05605 0.44 -0.5
1,307,769 + LRK53_RS05605 0.44 -0.6
1,307,770 - LRK53_RS05605 0.44 -0.1
1,307,770 - LRK53_RS05605 0.44 -0.8
1,307,770 - LRK53_RS05605 0.44 -0.2
1,307,770 - LRK53_RS05605 0.44 +0.7
1,307,770 - LRK53_RS05605 0.44 +1.6
1,307,770 - LRK53_RS05605 0.44 -0.4
1,307,770 - LRK53_RS05605 0.44 -0.9
1,307,770 - LRK53_RS05605 0.44 +0.1
1,307,770 - LRK53_RS05605 0.44 -2.2
1,307,770 - LRK53_RS05605 0.44 -2.1
1,307,770 - LRK53_RS05605 0.44 -1.0
1,307,770 - LRK53_RS05605 0.44 -0.9
1,307,770 - LRK53_RS05605 0.44 -1.6
1,307,770 - LRK53_RS05605 0.44 -1.8
1,307,770 - LRK53_RS05605 0.44 +1.6
1,307,770 - LRK53_RS05605 0.44 +1.3
1,307,781 + LRK53_RS05605 0.47 +1.3
1,307,781 + LRK53_RS05605 0.47 +0.5
1,307,781 + LRK53_RS05605 0.47 -0.2
1,307,781 + LRK53_RS05605 0.47 +0.9
1,307,781 + LRK53_RS05605 0.47 -0.8
1,307,781 + LRK53_RS05605 0.47 -1.2
1,307,782 - LRK53_RS05605 0.48 -0.6
1,307,782 - LRK53_RS05605 0.48 -0.2
1,307,782 - LRK53_RS05605 0.48 -0.2
1,307,782 - LRK53_RS05605 0.48 +0.9
1,307,782 - LRK53_RS05605 0.48 -0.1
1,307,826 + LRK53_RS05605 0.60 +1.2
1,307,826 + LRK53_RS05605 0.60 -0.2
1,307,826 + LRK53_RS05605 0.60 -2.1
1,307,826 + LRK53_RS05605 0.60 +0.2
1,307,826 + LRK53_RS05605 0.60 -0.4
1,307,826 + LRK53_RS05605 0.60 +0.4
1,307,826 + LRK53_RS05605 0.60 -0.7
1,307,826 + LRK53_RS05605 0.60 -1.9
1,307,826 + LRK53_RS05605 0.60 +0.2
1,307,827 - LRK53_RS05605 0.60 -0.8
1,307,827 - LRK53_RS05605 0.60 -1.6
1,307,827 - LRK53_RS05605 0.60 -2.0
1,307,827 - LRK53_RS05605 0.60 +1.6
1,307,827 - LRK53_RS05605 0.60 -1.4
1,307,943 + +0.4
1,307,943 + +0.4
1,307,943 + -0.4
1,307,943 + +0.4
1,307,943 + -2.3
1,307,943 + -1.2
1,307,943 + -1.6
1,307,943 + -1.1
1,307,943 + -0.7
1,307,944 - -0.7
1,307,944 - -1.5
1,307,944 - -1.5
1,307,944 - -1.0
1,307,944 - +0.5
1,307,944 - -1.8
1,307,944 - -1.2
1,307,944 - +0.4
1,307,944 - +2.0
1,307,986 + -0.5

Or see this region's nucleotide sequence