Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01255 and LRK53_RS01260 are separated by 43 nucleotides LRK53_RS01260 and LRK53_RS01265 are separated by 126 nucleotides
LRK53_RS01255: LRK53_RS01255 - coniferyl aldehyde dehydrogenase, at 310,103 to 311,485
_RS01255
LRK53_RS01260: LRK53_RS01260 - restriction endonuclease, at 311,529 to 311,813
_RS01260
LRK53_RS01265: LRK53_RS01265 - bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA, at 311,940 to 315,095
_RS01265
Position (kb) 311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 310.633 kb on - strand, within LRK53_RS01255 at 310.660 kb on - strand, within LRK53_RS01255 at 310.660 kb on - strand, within LRK53_RS01255 at 310.686 kb on + strand, within LRK53_RS01255 at 310.686 kb on + strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.756 kb on - strand, within LRK53_RS01255 at 310.756 kb on - strand, within LRK53_RS01255 at 310.756 kb on - strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.146 kb on - strand, within LRK53_RS01255 at 311.146 kb on - strand, within LRK53_RS01255 at 311.146 kb on - strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.155 kb on - strand, within LRK53_RS01255 at 311.155 kb on - strand, within LRK53_RS01255 at 311.155 kb on - strand, within LRK53_RS01255 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.791 kb on + strand at 311.791 kb on + strand at 311.792 kb on - strand at 311.792 kb on - strand at 311.792 kb on - strand at 311.792 kb on - strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.837 kb on + strand at 311.837 kb on + strand at 311.838 kb on - strand at 311.920 kb on + strand at 311.920 kb on + strand at 311.920 kb on + strand at 311.921 kb on - strand at 311.921 kb on - strand at 311.921 kb on - strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.935 kb on - strand at 311.935 kb on - strand at 311.935 kb on - strand at 311.941 kb on + strand at 311.942 kb on - strand at 311.942 kb on - strand at 311.942 kb on - strand at 311.951 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.029 kb on - strand at 312.029 kb on - strand at 312.029 kb on - strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.126 kb on - strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Aluminum chloride 1mM remove 310,633 - LRK53_RS01255 0.38 -2.4 310,660 - LRK53_RS01255 0.40 +2.6 310,660 - LRK53_RS01255 0.40 +0.4 310,686 + LRK53_RS01255 0.42 -1.7 310,686 + LRK53_RS01255 0.42 -0.9 310,687 - LRK53_RS01255 0.42 -1.0 310,687 - LRK53_RS01255 0.42 -0.5 310,687 - LRK53_RS01255 0.42 +0.1 310,687 - LRK53_RS01255 0.42 -0.5 310,755 + LRK53_RS01255 0.47 -2.0 310,755 + LRK53_RS01255 0.47 +0.0 310,755 + LRK53_RS01255 0.47 -1.8 310,755 + LRK53_RS01255 0.47 -2.0 310,755 + LRK53_RS01255 0.47 -0.3 310,756 - LRK53_RS01255 0.47 -1.5 310,756 - LRK53_RS01255 0.47 -2.3 310,756 - LRK53_RS01255 0.47 +1.0 311,031 + LRK53_RS01255 0.67 -1.4 311,031 + LRK53_RS01255 0.67 -0.2 311,031 + LRK53_RS01255 0.67 +0.4 311,031 + LRK53_RS01255 0.67 -1.9 311,031 + LRK53_RS01255 0.67 +0.3 311,031 + LRK53_RS01255 0.67 -0.4 311,031 + LRK53_RS01255 0.67 +0.9 311,031 + LRK53_RS01255 0.67 -1.7 311,031 + LRK53_RS01255 0.67 -0.7 311,031 + LRK53_RS01255 0.67 +3.6 311,032 - LRK53_RS01255 0.67 -2.2 311,032 - LRK53_RS01255 0.67 -0.9 311,032 - LRK53_RS01255 0.67 -1.9 311,032 - LRK53_RS01255 0.67 +0.6 311,032 - LRK53_RS01255 0.67 -0.8 311,032 - LRK53_RS01255 0.67 -2.4 311,032 - LRK53_RS01255 0.67 -0.4 311,145 + LRK53_RS01255 0.75 +1.4 311,145 + LRK53_RS01255 0.75 -3.4 311,145 + LRK53_RS01255 0.75 -1.3 311,145 + LRK53_RS01255 0.75 -0.2 311,145 + LRK53_RS01255 0.75 +0.4 311,145 + LRK53_RS01255 0.75 -0.7 311,145 + LRK53_RS01255 0.75 -1.3 311,145 + LRK53_RS01255 0.75 -0.4 311,146 - LRK53_RS01255 0.75 -0.8 311,146 - LRK53_RS01255 0.75 +3.0 311,146 - LRK53_RS01255 0.75 -0.8 311,154 + LRK53_RS01255 0.76 +0.2 311,154 + LRK53_RS01255 0.76 +0.1 311,154 + LRK53_RS01255 0.76 -0.6 311,154 + LRK53_RS01255 0.76 -0.8 311,155 - LRK53_RS01255 0.76 -0.7 311,155 - LRK53_RS01255 0.76 -0.4 311,155 - LRK53_RS01255 0.76 -0.7 311,575 + LRK53_RS01260 0.16 -1.5 311,575 + LRK53_RS01260 0.16 +0.4 311,575 + LRK53_RS01260 0.16 -0.7 311,575 + LRK53_RS01260 0.16 +0.2 311,575 + LRK53_RS01260 0.16 +1.3 311,575 + LRK53_RS01260 0.16 -0.4 311,575 + LRK53_RS01260 0.16 -3.1 311,575 + LRK53_RS01260 0.16 -0.2 311,575 + LRK53_RS01260 0.16 -1.0 311,575 + LRK53_RS01260 0.16 -0.5 311,575 + LRK53_RS01260 0.16 -0.5 311,575 + LRK53_RS01260 0.16 -0.6 311,575 + LRK53_RS01260 0.16 -1.0 311,575 + LRK53_RS01260 0.16 -0.0 311,575 + LRK53_RS01260 0.16 -0.4 311,575 + LRK53_RS01260 0.16 -1.0 311,575 + LRK53_RS01260 0.16 -1.3 311,575 + LRK53_RS01260 0.16 -1.8 311,575 + LRK53_RS01260 0.16 -0.0 311,575 + LRK53_RS01260 0.16 -1.8 311,575 + LRK53_RS01260 0.16 +1.5 311,575 + LRK53_RS01260 0.16 -1.8 311,575 + LRK53_RS01260 0.16 -0.4 311,575 + LRK53_RS01260 0.16 -1.7 311,575 + LRK53_RS01260 0.16 -0.2 311,575 + LRK53_RS01260 0.16 +2.2 311,575 + LRK53_RS01260 0.16 -0.2 311,575 + LRK53_RS01260 0.16 -2.5 311,575 + LRK53_RS01260 0.16 -1.9 311,576 - LRK53_RS01260 0.16 -0.6 311,576 - LRK53_RS01260 0.16 -0.9 311,576 - LRK53_RS01260 0.16 +0.7 311,576 - LRK53_RS01260 0.16 -1.4 311,576 - LRK53_RS01260 0.16 +0.4 311,576 - LRK53_RS01260 0.16 -0.5 311,576 - LRK53_RS01260 0.16 -1.2 311,576 - LRK53_RS01260 0.16 +0.5 311,576 - LRK53_RS01260 0.16 +2.4 311,576 - LRK53_RS01260 0.16 -1.0 311,576 - LRK53_RS01260 0.16 -0.6 311,576 - LRK53_RS01260 0.16 +0.2 311,576 - LRK53_RS01260 0.16 -0.9 311,576 - LRK53_RS01260 0.16 -0.4 311,576 - LRK53_RS01260 0.16 +0.2 311,576 - LRK53_RS01260 0.16 -0.9 311,576 - LRK53_RS01260 0.16 -0.7 311,576 - LRK53_RS01260 0.16 -0.4 311,576 - LRK53_RS01260 0.16 -1.3 311,576 - LRK53_RS01260 0.16 -0.0 311,576 - LRK53_RS01260 0.16 +3.0 311,576 - LRK53_RS01260 0.16 -1.6 311,576 - LRK53_RS01260 0.16 -0.8 311,576 - LRK53_RS01260 0.16 +3.1 311,576 - LRK53_RS01260 0.16 -0.3 311,576 - LRK53_RS01260 0.16 -2.3 311,576 - LRK53_RS01260 0.16 -1.8 311,791 + -1.7 311,791 + -1.7 311,792 - -1.9 311,792 - -0.5 311,792 - -0.6 311,792 - +0.2 311,823 + -2.9 311,823 + +0.1 311,823 + -0.4 311,823 + -1.5 311,823 + -0.2 311,824 - -0.3 311,824 - +0.2 311,824 - -0.7 311,824 - +0.0 311,824 - -0.1 311,824 - -2.4 311,837 + -1.3 311,837 + -1.4 311,838 - -1.4 311,920 + -0.7 311,920 + +1.6 311,920 + -1.5 311,921 - +0.0 311,921 - +0.5 311,921 - +1.7 311,934 + +1.0 311,934 + -0.0 311,934 + +2.7 311,934 + -0.5 311,934 + -0.2 311,934 + -0.9 311,935 - +3.2 311,935 - -0.2 311,935 - -0.5 311,941 + -2.2 311,942 - -0.6 311,942 - -0.7 311,942 - -0.0 311,951 + -0.2 312,028 + -0.4 312,028 + +0.1 312,028 + -0.2 312,028 + -2.8 312,028 + +0.7 312,029 - +1.2 312,029 - -0.6 312,029 - -0.8 312,124 + -1.9 312,124 + +1.2 312,124 + -0.0 312,124 + -0.7 312,124 + -1.9 312,125 - +2.1 312,125 - -1.1 312,125 - -2.1 312,125 - -1.0 312,125 - -1.1 312,125 - +1.0 312,125 - +2.1 312,125 - +1.5 312,125 - -1.4 312,125 - -1.3 312,125 - +0.2 312,125 - -1.9 312,125 - -1.9 312,125 - -1.4 312,125 - +0.4 312,126 - -0.8 312,157 + +0.6 312,157 + -1.0 312,157 + -2.7 312,157 + -0.2 312,157 + -0.0 312,157 + -1.5 312,157 + -1.2 312,157 + -0.8 312,157 + +2.2 312,157 + +0.4 312,157 + -1.6 312,157 + -2.9 312,157 + +0.4 312,157 + -2.5 312,157 + -1.8 312,157 + -2.8 312,157 + +0.0 312,157 + -0.1 312,157 + -0.4 312,157 + -1.6 312,158 - -1.0 312,158 - -0.6 312,158 - +0.2 312,158 - +1.1 312,158 - -0.0 312,158 - +0.4 312,158 - -0.0 312,158 - -1.7 312,158 - +0.5 312,158 - +0.4 312,158 - +0.1 312,158 - -0.5 312,158 - +0.2 312,158 - -0.9 312,158 - -1.0
Or see this region's nucleotide sequence