Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44150

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44150 and QEN71_RS44155 are separated by 6 nucleotidesQEN71_RS44155 and QEN71_RS44160 overlap by 26 nucleotides QEN71_RS44150: QEN71_RS44150 - Mu transposase C-terminal domain-containing protein, at 309,625 to 311,250 _RS44150 QEN71_RS44155: QEN71_RS44155 - TniB family NTP-binding protein, at 311,257 to 312,129 _RS44155 QEN71_RS44160: QEN71_RS44160 - TniQ family protein, at 312,104 to 312,634 _RS44160 Position (kb) 309 310 311 312Strain fitness (log2 ratio) -2 -1 0 1 2at 308.643 kb on + strandat 308.643 kb on + strandat 308.653 kb on + strandat 308.653 kb on + strandat 308.653 kb on + strandat 308.654 kb on - strandat 308.755 kb on + strandat 308.755 kb on + strandat 308.755 kb on + strandat 308.756 kb on - strandat 308.756 kb on - strandat 308.756 kb on - strandat 308.756 kb on - strandat 308.846 kb on + strandat 308.925 kb on + strandat 308.925 kb on + strandat 308.925 kb on + strandat 308.926 kb on - strandat 309.027 kb on + strandat 309.027 kb on + strandat 309.028 kb on - strandat 309.059 kb on + strandat 309.059 kb on + strandat 309.101 kb on + strandat 309.101 kb on + strandat 309.102 kb on - strandat 309.266 kb on + strandat 309.468 kb on - strandat 309.469 kb on + strandat 309.470 kb on - strandat 309.470 kb on - strandat 309.470 kb on - strandat 309.470 kb on - strandat 309.470 kb on - strandat 309.504 kb on + strandat 309.505 kb on - strandat 309.599 kb on - strandat 309.629 kb on + strandat 309.629 kb on + strandat 309.760 kb on + strandat 309.837 kb on + strand, within QEN71_RS44150at 309.858 kb on + strand, within QEN71_RS44150at 309.858 kb on + strand, within QEN71_RS44150at 309.859 kb on - strand, within QEN71_RS44150at 309.859 kb on - strand, within QEN71_RS44150at 309.859 kb on - strand, within QEN71_RS44150at 309.859 kb on - strand, within QEN71_RS44150at 309.881 kb on + strand, within QEN71_RS44150at 309.881 kb on + strand, within QEN71_RS44150at 309.882 kb on - strand, within QEN71_RS44150at 309.882 kb on - strand, within QEN71_RS44150at 309.938 kb on + strand, within QEN71_RS44150at 309.939 kb on - strand, within QEN71_RS44150at 310.123 kb on - strand, within QEN71_RS44150at 310.137 kb on + strand, within QEN71_RS44150at 310.137 kb on + strand, within QEN71_RS44150at 310.137 kb on + strand, within QEN71_RS44150at 310.138 kb on - strand, within QEN71_RS44150at 310.138 kb on - strand, within QEN71_RS44150at 310.142 kb on + strand, within QEN71_RS44150at 310.142 kb on + strand, within QEN71_RS44150at 310.393 kb on - strand, within QEN71_RS44150at 310.438 kb on + strand, within QEN71_RS44150at 310.439 kb on - strand, within QEN71_RS44150at 310.439 kb on - strand, within QEN71_RS44150at 310.497 kb on + strand, within QEN71_RS44150at 310.498 kb on - strand, within QEN71_RS44150at 310.639 kb on + strand, within QEN71_RS44150at 310.694 kb on + strand, within QEN71_RS44150at 310.694 kb on + strand, within QEN71_RS44150at 310.694 kb on + strand, within QEN71_RS44150at 310.695 kb on - strand, within QEN71_RS44150at 310.695 kb on - strand, within QEN71_RS44150at 310.695 kb on - strand, within QEN71_RS44150at 310.808 kb on + strand, within QEN71_RS44150at 310.839 kb on + strand, within QEN71_RS44150at 310.839 kb on + strand, within QEN71_RS44150at 310.840 kb on - strand, within QEN71_RS44150at 310.840 kb on - strand, within QEN71_RS44150at 310.879 kb on + strand, within QEN71_RS44150at 310.906 kb on + strand, within QEN71_RS44150at 310.906 kb on + strand, within QEN71_RS44150at 310.907 kb on - strand, within QEN71_RS44150at 310.907 kb on - strand, within QEN71_RS44150at 310.907 kb on - strand, within QEN71_RS44150at 310.911 kb on - strand, within QEN71_RS44150at 310.997 kb on + strand, within QEN71_RS44150at 311.109 kb on - strandat 311.112 kb on - strandat 311.179 kb on - strandat 311.210 kb on - strandat 311.210 kb on - strandat 311.212 kb on - strandat 311.222 kb on + strandat 311.255 kb on + strandat 311.256 kb on - strandat 311.256 kb on - strandat 311.362 kb on + strand, within QEN71_RS44155at 311.362 kb on + strand, within QEN71_RS44155at 311.397 kb on + strand, within QEN71_RS44155at 311.402 kb on + strand, within QEN71_RS44155at 311.402 kb on + strand, within QEN71_RS44155at 311.403 kb on - strand, within QEN71_RS44155at 311.461 kb on - strand, within QEN71_RS44155at 311.603 kb on + strand, within QEN71_RS44155at 311.989 kb on + strand, within QEN71_RS44155at 311.990 kb on - strand, within QEN71_RS44155at 311.990 kb on - strand, within QEN71_RS44155at 311.993 kb on + strand, within QEN71_RS44155at 311.993 kb on + strand, within QEN71_RS44155at 311.994 kb on - strand, within QEN71_RS44155at 311.994 kb on - strand, within QEN71_RS44155at 312.027 kb on - strand, within QEN71_RS44155at 312.099 kb on - strandat 312.114 kb on + strandat 312.114 kb on + strandat 312.115 kb on - strandat 312.127 kb on + strandat 312.127 kb on + strandat 312.131 kb on + strandat 312.131 kb on + strandat 312.132 kb on - strandat 312.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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308,643 + -1.5
308,643 + -0.5
308,653 + +0.9
308,653 + +0.4
308,653 + -2.1
308,654 - -0.0
308,755 + +1.1
308,755 + -0.8
308,755 + +0.2
308,756 - +0.2
308,756 - -0.4
308,756 - -0.0
308,756 - -1.1
308,846 + +0.2
308,925 + -2.0
308,925 + -0.2
308,925 + +1.7
308,926 - +0.1
309,027 + -0.3
309,027 + +0.2
309,028 - -1.2
309,059 + -0.0
309,059 + +0.4
309,101 + -0.3
309,101 + -1.1
309,102 - -0.3
309,266 + -2.4
309,468 - +2.0
309,469 + -0.3
309,470 - -1.8
309,470 - -0.0
309,470 - -0.9
309,470 - -0.6
309,470 - +0.4
309,504 + +0.2
309,505 - +1.4
309,599 - +0.6
309,629 + +1.7
309,629 + -0.4
309,760 + +0.2
309,837 + QEN71_RS44150 0.13 +0.3
309,858 + QEN71_RS44150 0.14 +0.2
309,858 + QEN71_RS44150 0.14 +0.7
309,859 - QEN71_RS44150 0.14 +0.4
309,859 - QEN71_RS44150 0.14 -0.4
309,859 - QEN71_RS44150 0.14 +0.5
309,859 - QEN71_RS44150 0.14 +1.3
309,881 + QEN71_RS44150 0.16 +0.1
309,881 + QEN71_RS44150 0.16 +1.1
309,882 - QEN71_RS44150 0.16 +0.2
309,882 - QEN71_RS44150 0.16 -0.3
309,938 + QEN71_RS44150 0.19 -0.2
309,939 - QEN71_RS44150 0.19 -1.7
310,123 - QEN71_RS44150 0.31 +0.2
310,137 + QEN71_RS44150 0.31 +0.6
310,137 + QEN71_RS44150 0.31 -0.1
310,137 + QEN71_RS44150 0.31 +0.3
310,138 - QEN71_RS44150 0.32 +0.0
310,138 - QEN71_RS44150 0.32 -0.5
310,142 + QEN71_RS44150 0.32 -1.5
310,142 + QEN71_RS44150 0.32 +0.4
310,393 - QEN71_RS44150 0.47 +0.0
310,438 + QEN71_RS44150 0.50 -0.4
310,439 - QEN71_RS44150 0.50 +0.3
310,439 - QEN71_RS44150 0.50 +0.8
310,497 + QEN71_RS44150 0.54 +2.1
310,498 - QEN71_RS44150 0.54 -1.7
310,639 + QEN71_RS44150 0.62 -0.6
310,694 + QEN71_RS44150 0.66 -0.4
310,694 + QEN71_RS44150 0.66 -1.2
310,694 + QEN71_RS44150 0.66 +0.4
310,695 - QEN71_RS44150 0.66 -0.8
310,695 - QEN71_RS44150 0.66 -0.5
310,695 - QEN71_RS44150 0.66 -0.1
310,808 + QEN71_RS44150 0.73 -0.9
310,839 + QEN71_RS44150 0.75 +0.5
310,839 + QEN71_RS44150 0.75 +0.4
310,840 - QEN71_RS44150 0.75 -0.1
310,840 - QEN71_RS44150 0.75 +0.5
310,879 + QEN71_RS44150 0.77 -0.5
310,906 + QEN71_RS44150 0.79 +0.3
310,906 + QEN71_RS44150 0.79 +1.1
310,907 - QEN71_RS44150 0.79 -0.2
310,907 - QEN71_RS44150 0.79 -0.2
310,907 - QEN71_RS44150 0.79 +0.7
310,911 - QEN71_RS44150 0.79 +0.6
310,997 + QEN71_RS44150 0.84 +1.3
311,109 - -0.3
311,112 - +0.4
311,179 - -0.7
311,210 - +0.2
311,210 - -0.6
311,212 - +0.7
311,222 + +0.6
311,255 + +0.1
311,256 - +1.0
311,256 - +0.2
311,362 + QEN71_RS44155 0.12 +1.2
311,362 + QEN71_RS44155 0.12 -0.3
311,397 + QEN71_RS44155 0.16 -1.8
311,402 + QEN71_RS44155 0.17 -1.5
311,402 + QEN71_RS44155 0.17 -0.4
311,403 - QEN71_RS44155 0.17 -1.2
311,461 - QEN71_RS44155 0.23 -0.3
311,603 + QEN71_RS44155 0.40 -0.3
311,989 + QEN71_RS44155 0.84 -0.3
311,990 - QEN71_RS44155 0.84 +0.7
311,990 - QEN71_RS44155 0.84 -0.3
311,993 + QEN71_RS44155 0.84 -0.9
311,993 + QEN71_RS44155 0.84 +1.4
311,994 - QEN71_RS44155 0.84 +0.3
311,994 - QEN71_RS44155 0.84 +1.1
312,027 - QEN71_RS44155 0.88 +0.1
312,099 - -0.5
312,114 + +1.0
312,114 + -0.8
312,115 - +0.1
312,127 + -0.9
312,127 + +0.7
312,131 + -0.0
312,131 + +0.1
312,132 - -0.1
312,132 - -0.2

Or see this region's nucleotide sequence