Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27005

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27000 and QEN71_RS27005 are separated by 186 nucleotidesQEN71_RS27005 and QEN71_RS27010 are separated by 105 nucleotides QEN71_RS27000: QEN71_RS27000 - FadR/GntR family transcriptional regulator, at 6,021,370 to 6,022,062 _RS27000 QEN71_RS27005: QEN71_RS27005 - type I glyceraldehyde-3-phosphate dehydrogenase, at 6,022,249 to 6,023,259 _RS27005 QEN71_RS27010: QEN71_RS27010 - transketolase, at 6,023,365 to 6,025,383 _RS27010 Position (kb) 6022 6023 6024Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 6021.251 kb on - strandat 6021.251 kb on - strandat 6021.330 kb on + strandat 6021.330 kb on + strandat 6021.331 kb on - strandat 6021.331 kb on - strandat 6021.331 kb on - strandat 6021.331 kb on - strandat 6021.442 kb on + strand, within QEN71_RS27000at 6021.443 kb on - strand, within QEN71_RS27000at 6021.443 kb on - strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.577 kb on + strand, within QEN71_RS27000at 6021.578 kb on - strand, within QEN71_RS27000at 6021.578 kb on - strand, within QEN71_RS27000at 6021.578 kb on - strand, within QEN71_RS27000at 6021.578 kb on - strand, within QEN71_RS27000at 6021.578 kb on - strand, within QEN71_RS27000at 6021.645 kb on + strand, within QEN71_RS27000at 6021.645 kb on + strand, within QEN71_RS27000at 6021.645 kb on + strand, within QEN71_RS27000at 6021.645 kb on + strand, within QEN71_RS27000at 6021.645 kb on + strand, within QEN71_RS27000at 6021.646 kb on - strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.649 kb on + strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.650 kb on - strand, within QEN71_RS27000at 6021.738 kb on + strand, within QEN71_RS27000at 6021.810 kb on + strand, within QEN71_RS27000at 6021.810 kb on + strand, within QEN71_RS27000at 6021.810 kb on + strand, within QEN71_RS27000at 6021.810 kb on + strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.811 kb on - strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.852 kb on + strand, within QEN71_RS27000at 6021.873 kb on + strand, within QEN71_RS27000at 6021.873 kb on + strand, within QEN71_RS27000at 6021.874 kb on - strand, within QEN71_RS27000at 6021.904 kb on + strand, within QEN71_RS27000at 6021.905 kb on - strand, within QEN71_RS27000at 6021.905 kb on - strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.927 kb on + strand, within QEN71_RS27000at 6021.928 kb on - strand, within QEN71_RS27000at 6021.928 kb on - strand, within QEN71_RS27000at 6021.928 kb on - strand, within QEN71_RS27000at 6021.928 kb on - strand, within QEN71_RS27000at 6021.928 kb on - strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.931 kb on + strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.932 kb on - strand, within QEN71_RS27000at 6021.963 kb on + strand, within QEN71_RS27000at 6021.963 kb on + strand, within QEN71_RS27000at 6021.997 kb on - strandat 6022.015 kb on - strandat 6022.039 kb on + strandat 6022.040 kb on - strandat 6022.040 kb on - strandat 6022.040 kb on - strandat 6022.040 kb on - strandat 6022.040 kb on - strandat 6022.156 kb on + strandat 6022.156 kb on + strandat 6022.156 kb on + strandat 6022.157 kb on - strandat 6022.157 kb on - strandat 6022.157 kb on - strandat 6022.157 kb on - strandat 6022.157 kb on - strandat 6022.157 kb on - strandat 6022.160 kb on - strandat 6022.160 kb on - strandat 6022.250 kb on + strandat 6022.250 kb on + strandat 6022.251 kb on - strandat 6022.287 kb on + strandat 6022.425 kb on + strand, within QEN71_RS27005at 6022.426 kb on - strand, within QEN71_RS27005at 6022.426 kb on - strand, within QEN71_RS27005at 6022.426 kb on - strand, within QEN71_RS27005at 6022.426 kb on - strand, within QEN71_RS27005at 6022.426 kb on - strand, within QEN71_RS27005at 6022.680 kb on - strand, within QEN71_RS27005at 6022.710 kb on - strand, within QEN71_RS27005at 6022.854 kb on - strand, within QEN71_RS27005at 6023.111 kb on + strand, within QEN71_RS27005at 6023.195 kb on + strandat 6023.264 kb on + strandat 6023.265 kb on - strandat 6023.265 kb on - strandat 6023.265 kb on - strandat 6023.265 kb on - strandat 6023.265 kb on - strandat 6023.265 kb on - strandat 6023.265 kb on - strandat 6023.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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6,021,251 - +0.0
6,021,251 - -0.1
6,021,330 + -1.3
6,021,330 + -1.7
6,021,331 - -1.5
6,021,331 - +0.0
6,021,331 - +0.5
6,021,331 - -0.4
6,021,442 + QEN71_RS27000 0.10 -0.2
6,021,443 - QEN71_RS27000 0.11 -0.2
6,021,443 - QEN71_RS27000 0.11 -1.1
6,021,577 + QEN71_RS27000 0.30 +0.3
6,021,577 + QEN71_RS27000 0.30 -0.8
6,021,577 + QEN71_RS27000 0.30 +0.4
6,021,577 + QEN71_RS27000 0.30 -0.6
6,021,577 + QEN71_RS27000 0.30 +0.5
6,021,577 + QEN71_RS27000 0.30 +0.0
6,021,577 + QEN71_RS27000 0.30 -0.6
6,021,577 + QEN71_RS27000 0.30 -0.1
6,021,577 + QEN71_RS27000 0.30 -0.7
6,021,577 + QEN71_RS27000 0.30 +0.8
6,021,577 + QEN71_RS27000 0.30 +0.6
6,021,578 - QEN71_RS27000 0.30 -0.0
6,021,578 - QEN71_RS27000 0.30 -0.4
6,021,578 - QEN71_RS27000 0.30 +1.3
6,021,578 - QEN71_RS27000 0.30 -0.1
6,021,578 - QEN71_RS27000 0.30 +0.5
6,021,645 + QEN71_RS27000 0.40 -0.2
6,021,645 + QEN71_RS27000 0.40 -0.3
6,021,645 + QEN71_RS27000 0.40 -0.4
6,021,645 + QEN71_RS27000 0.40 -0.2
6,021,645 + QEN71_RS27000 0.40 -3.8
6,021,646 - QEN71_RS27000 0.40 -1.0
6,021,649 + QEN71_RS27000 0.40 +0.8
6,021,649 + QEN71_RS27000 0.40 +0.0
6,021,649 + QEN71_RS27000 0.40 -1.0
6,021,649 + QEN71_RS27000 0.40 +0.7
6,021,649 + QEN71_RS27000 0.40 -0.9
6,021,649 + QEN71_RS27000 0.40 -0.7
6,021,649 + QEN71_RS27000 0.40 +0.3
6,021,649 + QEN71_RS27000 0.40 -2.9
6,021,649 + QEN71_RS27000 0.40 -0.5
6,021,650 - QEN71_RS27000 0.40 +1.0
6,021,650 - QEN71_RS27000 0.40 -0.1
6,021,650 - QEN71_RS27000 0.40 +0.8
6,021,650 - QEN71_RS27000 0.40 -1.0
6,021,650 - QEN71_RS27000 0.40 -0.8
6,021,650 - QEN71_RS27000 0.40 -0.4
6,021,650 - QEN71_RS27000 0.40 +0.2
6,021,650 - QEN71_RS27000 0.40 -2.1
6,021,650 - QEN71_RS27000 0.40 +0.3
6,021,650 - QEN71_RS27000 0.40 -0.0
6,021,650 - QEN71_RS27000 0.40 -0.2
6,021,650 - QEN71_RS27000 0.40 -1.9
6,021,650 - QEN71_RS27000 0.40 +0.3
6,021,650 - QEN71_RS27000 0.40 +0.5
6,021,738 + QEN71_RS27000 0.53 +0.3
6,021,810 + QEN71_RS27000 0.63 -1.3
6,021,810 + QEN71_RS27000 0.63 -0.5
6,021,810 + QEN71_RS27000 0.63 +0.1
6,021,810 + QEN71_RS27000 0.63 +0.1
6,021,811 - QEN71_RS27000 0.64 +0.2
6,021,811 - QEN71_RS27000 0.64 -0.7
6,021,811 - QEN71_RS27000 0.64 +1.8
6,021,811 - QEN71_RS27000 0.64 +0.3
6,021,811 - QEN71_RS27000 0.64 +1.8
6,021,811 - QEN71_RS27000 0.64 -2.2
6,021,811 - QEN71_RS27000 0.64 +0.8
6,021,811 - QEN71_RS27000 0.64 -0.5
6,021,811 - QEN71_RS27000 0.64 -0.7
6,021,852 + QEN71_RS27000 0.70 +1.5
6,021,852 + QEN71_RS27000 0.70 -0.7
6,021,852 + QEN71_RS27000 0.70 -0.2
6,021,852 + QEN71_RS27000 0.70 -0.2
6,021,852 + QEN71_RS27000 0.70 -0.2
6,021,852 + QEN71_RS27000 0.70 +0.5
6,021,852 + QEN71_RS27000 0.70 -0.8
6,021,873 + QEN71_RS27000 0.73 -0.3
6,021,873 + QEN71_RS27000 0.73 -0.4
6,021,874 - QEN71_RS27000 0.73 +1.2
6,021,904 + QEN71_RS27000 0.77 +0.2
6,021,905 - QEN71_RS27000 0.77 -1.2
6,021,905 - QEN71_RS27000 0.77 +0.3
6,021,927 + QEN71_RS27000 0.80 +0.6
6,021,927 + QEN71_RS27000 0.80 +0.3
6,021,927 + QEN71_RS27000 0.80 +0.8
6,021,927 + QEN71_RS27000 0.80 -0.0
6,021,927 + QEN71_RS27000 0.80 -1.2
6,021,927 + QEN71_RS27000 0.80 -0.2
6,021,927 + QEN71_RS27000 0.80 -0.1
6,021,927 + QEN71_RS27000 0.80 -1.0
6,021,928 - QEN71_RS27000 0.81 +0.2
6,021,928 - QEN71_RS27000 0.81 -0.8
6,021,928 - QEN71_RS27000 0.81 -0.5
6,021,928 - QEN71_RS27000 0.81 +0.4
6,021,928 - QEN71_RS27000 0.81 +0.2
6,021,931 + QEN71_RS27000 0.81 +0.1
6,021,931 + QEN71_RS27000 0.81 -2.4
6,021,931 + QEN71_RS27000 0.81 +0.6
6,021,931 + QEN71_RS27000 0.81 +0.1
6,021,931 + QEN71_RS27000 0.81 +0.3
6,021,931 + QEN71_RS27000 0.81 -1.1
6,021,931 + QEN71_RS27000 0.81 +0.8
6,021,931 + QEN71_RS27000 0.81 +0.0
6,021,931 + QEN71_RS27000 0.81 +0.6
6,021,931 + QEN71_RS27000 0.81 -0.2
6,021,931 + QEN71_RS27000 0.81 +0.3
6,021,931 + QEN71_RS27000 0.81 +0.3
6,021,931 + QEN71_RS27000 0.81 -0.1
6,021,931 + QEN71_RS27000 0.81 +0.1
6,021,932 - QEN71_RS27000 0.81 -0.1
6,021,932 - QEN71_RS27000 0.81 +0.6
6,021,932 - QEN71_RS27000 0.81 -0.6
6,021,932 - QEN71_RS27000 0.81 -0.7
6,021,932 - QEN71_RS27000 0.81 -0.6
6,021,932 - QEN71_RS27000 0.81 -2.2
6,021,932 - QEN71_RS27000 0.81 -1.0
6,021,932 - QEN71_RS27000 0.81 -1.1
6,021,932 - QEN71_RS27000 0.81 +1.0
6,021,932 - QEN71_RS27000 0.81 +1.6
6,021,932 - QEN71_RS27000 0.81 -0.7
6,021,932 - QEN71_RS27000 0.81 -0.0
6,021,932 - QEN71_RS27000 0.81 -0.7
6,021,932 - QEN71_RS27000 0.81 +0.3
6,021,932 - QEN71_RS27000 0.81 +1.0
6,021,963 + QEN71_RS27000 0.86 +0.5
6,021,963 + QEN71_RS27000 0.86 +0.4
6,021,997 - -0.2
6,022,015 - -2.0
6,022,039 + -0.1
6,022,040 - -0.3
6,022,040 - -0.3
6,022,040 - -0.8
6,022,040 - -0.2
6,022,040 - +1.8
6,022,156 + -0.1
6,022,156 + +0.3
6,022,156 + -0.6
6,022,157 - +0.1
6,022,157 - -0.3
6,022,157 - -0.2
6,022,157 - -1.3
6,022,157 - +0.3
6,022,157 - +0.3
6,022,160 - +0.5
6,022,160 - -0.7
6,022,250 + +0.1
6,022,250 + +0.2
6,022,251 - +1.6
6,022,287 + -1.4
6,022,425 + QEN71_RS27005 0.17 -1.9
6,022,426 - QEN71_RS27005 0.18 -6.3
6,022,426 - QEN71_RS27005 0.18 -2.6
6,022,426 - QEN71_RS27005 0.18 -0.7
6,022,426 - QEN71_RS27005 0.18 -2.0
6,022,426 - QEN71_RS27005 0.18 -2.7
6,022,680 - QEN71_RS27005 0.43 -3.9
6,022,710 - QEN71_RS27005 0.46 -4.0
6,022,854 - QEN71_RS27005 0.60 -1.3
6,023,111 + QEN71_RS27005 0.85 -1.2
6,023,195 + -1.3
6,023,264 + -2.5
6,023,265 - -1.5
6,023,265 - -1.7
6,023,265 - -1.2
6,023,265 - -2.2
6,023,265 - +0.5
6,023,265 - -0.7
6,023,265 - -0.5
6,023,383 - -0.0

Or see this region's nucleotide sequence