Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03280

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03275 and QEN71_RS03280 are separated by 120 nucleotidesQEN71_RS03280 and QEN71_RS03285 overlap by 4 nucleotidesQEN71_RS03285 and QEN71_RS03290 are separated by 78 nucleotides QEN71_RS03275: QEN71_RS03275 - pyridoxal phosphate-dependent aminotransferase, at 727,267 to 728,460 _RS03275 QEN71_RS03280: QEN71_RS03280 - transcription antitermination factor NusB, at 728,581 to 729,018 _RS03280 QEN71_RS03285: QEN71_RS03285 - 6,7-dimethyl-8-ribityllumazine synthase, at 729,015 to 729,533 _RS03285 QEN71_RS03290: QEN71_RS03290 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 729,612 to 730,748 _RS03290 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2at 727.583 kb on + strand, within QEN71_RS03275at 727.583 kb on + strand, within QEN71_RS03275at 727.583 kb on + strand, within QEN71_RS03275at 727.583 kb on + strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.584 kb on - strand, within QEN71_RS03275at 727.596 kb on + strand, within QEN71_RS03275at 727.596 kb on + strand, within QEN71_RS03275at 727.739 kb on + strand, within QEN71_RS03275at 727.739 kb on + strand, within QEN71_RS03275at 727.739 kb on + strand, within QEN71_RS03275at 727.740 kb on - strand, within QEN71_RS03275at 727.740 kb on - strand, within QEN71_RS03275at 727.740 kb on - strand, within QEN71_RS03275at 727.740 kb on - strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.808 kb on + strand, within QEN71_RS03275at 727.809 kb on - strand, within QEN71_RS03275at 727.809 kb on - strand, within QEN71_RS03275at 727.809 kb on - strand, within QEN71_RS03275at 727.809 kb on - strand, within QEN71_RS03275at 727.823 kb on + strand, within QEN71_RS03275at 727.823 kb on + strand, within QEN71_RS03275at 727.824 kb on - strand, within QEN71_RS03275at 727.824 kb on - strand, within QEN71_RS03275at 727.905 kb on + strand, within QEN71_RS03275at 727.905 kb on + strand, within QEN71_RS03275at 728.066 kb on + strand, within QEN71_RS03275at 728.067 kb on - strand, within QEN71_RS03275at 728.067 kb on - strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.186 kb on + strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.187 kb on - strand, within QEN71_RS03275at 728.198 kb on + strand, within QEN71_RS03275at 728.198 kb on + strand, within QEN71_RS03275at 728.198 kb on + strand, within QEN71_RS03275at 728.198 kb on + strand, within QEN71_RS03275at 728.198 kb on + strand, within QEN71_RS03275at 728.198 kb on + strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.199 kb on - strand, within QEN71_RS03275at 728.249 kb on + strand, within QEN71_RS03275at 728.249 kb on + strand, within QEN71_RS03275at 728.249 kb on + strand, within QEN71_RS03275at 728.249 kb on + strand, within QEN71_RS03275at 728.250 kb on - strand, within QEN71_RS03275at 728.334 kb on + strand, within QEN71_RS03275at 728.334 kb on + strand, within QEN71_RS03275at 728.334 kb on + strand, within QEN71_RS03275at 728.334 kb on + strand, within QEN71_RS03275at 728.335 kb on - strand, within QEN71_RS03275at 728.396 kb on + strandat 728.396 kb on + strandat 728.396 kb on + strandat 728.397 kb on - strandat 728.397 kb on - strandat 728.397 kb on - strandat 728.397 kb on - strandat 728.397 kb on - strandat 728.434 kb on + strandat 728.434 kb on + strandat 728.434 kb on + strandat 728.435 kb on - strandat 728.493 kb on + strandat 728.494 kb on - strandat 728.494 kb on - strandat 728.494 kb on - strandat 728.494 kb on - strandat 728.494 kb on - strandat 728.494 kb on - strandat 728.507 kb on + strandat 728.507 kb on + strandat 728.507 kb on + strandat 728.507 kb on + strandat 728.508 kb on - strandat 728.526 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.567 kb on + strandat 728.568 kb on - strandat 728.568 kb on - strandat 728.568 kb on - strandat 728.568 kb on - strandat 728.568 kb on - strandat 728.582 kb on + strandat 728.582 kb on + strandat 728.583 kb on - strandat 728.583 kb on - strandat 729.545 kb on - strandat 729.545 kb on - strandat 729.596 kb on - strandat 729.596 kb on - strandat 729.596 kb on - strandat 729.596 kb on - strandat 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290at 729.770 kb on - strand, within QEN71_RS03290

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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727,583 + QEN71_RS03275 0.26 -1.4
727,583 + QEN71_RS03275 0.26 +0.2
727,583 + QEN71_RS03275 0.26 -0.4
727,583 + QEN71_RS03275 0.26 -0.1
727,584 - QEN71_RS03275 0.27 -0.2
727,584 - QEN71_RS03275 0.27 -0.6
727,584 - QEN71_RS03275 0.27 -0.5
727,584 - QEN71_RS03275 0.27 -1.0
727,584 - QEN71_RS03275 0.27 +1.3
727,584 - QEN71_RS03275 0.27 +1.8
727,584 - QEN71_RS03275 0.27 +0.1
727,584 - QEN71_RS03275 0.27 +0.6
727,584 - QEN71_RS03275 0.27 -1.7
727,596 + QEN71_RS03275 0.28 -0.7
727,596 + QEN71_RS03275 0.28 -1.4
727,739 + QEN71_RS03275 0.40 +1.0
727,739 + QEN71_RS03275 0.40 -0.2
727,739 + QEN71_RS03275 0.40 -2.3
727,740 - QEN71_RS03275 0.40 -0.3
727,740 - QEN71_RS03275 0.40 -0.2
727,740 - QEN71_RS03275 0.40 -0.9
727,740 - QEN71_RS03275 0.40 -0.3
727,808 + QEN71_RS03275 0.45 -1.0
727,808 + QEN71_RS03275 0.45 -0.7
727,808 + QEN71_RS03275 0.45 +1.2
727,808 + QEN71_RS03275 0.45 -0.9
727,808 + QEN71_RS03275 0.45 -0.6
727,808 + QEN71_RS03275 0.45 +0.4
727,808 + QEN71_RS03275 0.45 -1.7
727,808 + QEN71_RS03275 0.45 -0.1
727,808 + QEN71_RS03275 0.45 +0.3
727,808 + QEN71_RS03275 0.45 +0.1
727,808 + QEN71_RS03275 0.45 +0.9
727,808 + QEN71_RS03275 0.45 +1.5
727,809 - QEN71_RS03275 0.45 -0.2
727,809 - QEN71_RS03275 0.45 -0.6
727,809 - QEN71_RS03275 0.45 -1.4
727,809 - QEN71_RS03275 0.45 -0.0
727,823 + QEN71_RS03275 0.47 +0.8
727,823 + QEN71_RS03275 0.47 -1.1
727,824 - QEN71_RS03275 0.47 +0.2
727,824 - QEN71_RS03275 0.47 -0.9
727,905 + QEN71_RS03275 0.53 +1.3
727,905 + QEN71_RS03275 0.53 -1.0
728,066 + QEN71_RS03275 0.67 -0.0
728,067 - QEN71_RS03275 0.67 -0.8
728,067 - QEN71_RS03275 0.67 -0.4
728,186 + QEN71_RS03275 0.77 -0.6
728,186 + QEN71_RS03275 0.77 +0.5
728,186 + QEN71_RS03275 0.77 +0.0
728,186 + QEN71_RS03275 0.77 +0.1
728,186 + QEN71_RS03275 0.77 -0.0
728,186 + QEN71_RS03275 0.77 -0.2
728,186 + QEN71_RS03275 0.77 -0.5
728,186 + QEN71_RS03275 0.77 -0.4
728,186 + QEN71_RS03275 0.77 +0.3
728,186 + QEN71_RS03275 0.77 -0.3
728,186 + QEN71_RS03275 0.77 -0.2
728,186 + QEN71_RS03275 0.77 -0.8
728,187 - QEN71_RS03275 0.77 +0.5
728,187 - QEN71_RS03275 0.77 -0.8
728,187 - QEN71_RS03275 0.77 -0.8
728,187 - QEN71_RS03275 0.77 +0.6
728,187 - QEN71_RS03275 0.77 -1.4
728,187 - QEN71_RS03275 0.77 -2.0
728,187 - QEN71_RS03275 0.77 -0.8
728,187 - QEN71_RS03275 0.77 +1.1
728,187 - QEN71_RS03275 0.77 +0.1
728,187 - QEN71_RS03275 0.77 +0.1
728,187 - QEN71_RS03275 0.77 +0.3
728,187 - QEN71_RS03275 0.77 +0.2
728,187 - QEN71_RS03275 0.77 -0.5
728,198 + QEN71_RS03275 0.78 +0.2
728,198 + QEN71_RS03275 0.78 -0.5
728,198 + QEN71_RS03275 0.78 -0.2
728,198 + QEN71_RS03275 0.78 +0.1
728,198 + QEN71_RS03275 0.78 -0.2
728,198 + QEN71_RS03275 0.78 -0.5
728,199 - QEN71_RS03275 0.78 +0.3
728,199 - QEN71_RS03275 0.78 -0.7
728,199 - QEN71_RS03275 0.78 -2.3
728,199 - QEN71_RS03275 0.78 -0.8
728,199 - QEN71_RS03275 0.78 +0.8
728,199 - QEN71_RS03275 0.78 +0.4
728,199 - QEN71_RS03275 0.78 -0.2
728,199 - QEN71_RS03275 0.78 -0.3
728,249 + QEN71_RS03275 0.82 -0.2
728,249 + QEN71_RS03275 0.82 -0.0
728,249 + QEN71_RS03275 0.82 -0.3
728,249 + QEN71_RS03275 0.82 +0.0
728,250 - QEN71_RS03275 0.82 -0.3
728,334 + QEN71_RS03275 0.89 +2.0
728,334 + QEN71_RS03275 0.89 +0.4
728,334 + QEN71_RS03275 0.89 -1.4
728,334 + QEN71_RS03275 0.89 +0.3
728,335 - QEN71_RS03275 0.89 +0.0
728,396 + +1.8
728,396 + -1.0
728,396 + -0.1
728,397 - -0.1
728,397 - +1.4
728,397 - +0.1
728,397 - -1.2
728,397 - +0.6
728,434 + +0.2
728,434 + -0.1
728,434 + +1.8
728,435 - -0.2
728,493 + +0.8
728,494 - -0.6
728,494 - -0.3
728,494 - -0.2
728,494 - +0.7
728,494 - +0.6
728,494 - -0.2
728,507 + +0.4
728,507 + +0.5
728,507 + -0.8
728,507 + -0.4
728,508 - +0.2
728,526 + +0.3
728,567 + -1.4
728,567 + +0.6
728,567 + -0.2
728,567 + +1.0
728,567 + +0.4
728,567 + -0.5
728,567 + +1.2
728,567 + +0.2
728,567 + -0.2
728,567 + +1.0
728,568 - -0.4
728,568 - -0.1
728,568 - -0.5
728,568 - +1.0
728,568 - +0.8
728,582 + -0.1
728,582 + -0.1
728,583 - +0.5
728,583 - -0.4
729,545 - -0.2
729,545 - +0.5
729,596 - +1.9
729,596 - +0.7
729,596 - +1.0
729,596 - -0.9
729,770 - QEN71_RS03290 0.14 -0.1
729,770 - QEN71_RS03290 0.14 -1.6
729,770 - QEN71_RS03290 0.14 +0.0
729,770 - QEN71_RS03290 0.14 +0.2
729,770 - QEN71_RS03290 0.14 -0.2
729,770 - QEN71_RS03290 0.14 -0.1
729,770 - QEN71_RS03290 0.14 -0.5
729,770 - QEN71_RS03290 0.14 -1.2
729,770 - QEN71_RS03290 0.14 -0.1
729,770 - QEN71_RS03290 0.14 -1.2
729,770 - QEN71_RS03290 0.14 -1.0
729,770 - QEN71_RS03290 0.14 -1.1
729,770 - QEN71_RS03290 0.14 +0.0

Or see this region's nucleotide sequence