Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33535 and QEN71_RS33540 are separated by 96 nucleotides QEN71_RS33540 and QEN71_RS33545 are separated by 45 nucleotides QEN71_RS33545 and QEN71_RS33550 are separated by 31 nucleotides
QEN71_RS33535: QEN71_RS33535 - Gfo/Idh/MocA family oxidoreductase, at 838,757 to 839,875
_RS33535
QEN71_RS33540: QEN71_RS33540 - carboxymuconolactone decarboxylase family protein, at 839,972 to 840,529
_RS33540
QEN71_RS33545: QEN71_RS33545 - helix-turn-helix transcriptional regulator, at 840,575 to 841,402
_RS33545
QEN71_RS33550: QEN71_RS33550 - MarR family transcriptional regulator, at 841,434 to 841,865
_RS33550
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 839.052 kb on - strand, within QEN71_RS33535 at 839.171 kb on + strand, within QEN71_RS33535 at 839.175 kb on + strand, within QEN71_RS33535 at 839.175 kb on + strand, within QEN71_RS33535 at 839.176 kb on - strand, within QEN71_RS33535 at 839.176 kb on - strand, within QEN71_RS33535 at 839.243 kb on + strand, within QEN71_RS33535 at 839.576 kb on - strand, within QEN71_RS33535 at 839.741 kb on + strand, within QEN71_RS33535 at 839.834 kb on + strand at 839.877 kb on + strand at 839.877 kb on + strand at 839.878 kb on - strand at 839.878 kb on - strand at 839.878 kb on - strand at 839.888 kb on + strand at 839.992 kb on + strand at 839.992 kb on + strand at 839.993 kb on - strand at 840.224 kb on - strand, within QEN71_RS33540 at 840.455 kb on + strand, within QEN71_RS33540 at 840.456 kb on - strand, within QEN71_RS33540 at 840.541 kb on + strand at 840.541 kb on + strand at 840.542 kb on - strand at 840.542 kb on - strand at 840.542 kb on - strand at 840.543 kb on + strand at 840.543 kb on + strand at 840.544 kb on - strand at 840.544 kb on - strand at 840.544 kb on - strand at 840.544 kb on - strand at 840.544 kb on - strand at 840.545 kb on + strand at 840.545 kb on + strand at 840.546 kb on - strand at 840.786 kb on + strand, within QEN71_RS33545 at 840.786 kb on + strand, within QEN71_RS33545 at 840.909 kb on + strand, within QEN71_RS33545 at 840.909 kb on + strand, within QEN71_RS33545 at 840.910 kb on - strand, within QEN71_RS33545 at 841.075 kb on + strand, within QEN71_RS33545 at 841.321 kb on - strand at 841.369 kb on + strand at 841.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 839,052 - QEN71_RS33535 0.26 +0.4 839,171 + QEN71_RS33535 0.37 -1.3 839,175 + QEN71_RS33535 0.37 -0.2 839,175 + QEN71_RS33535 0.37 -0.0 839,176 - QEN71_RS33535 0.37 -0.6 839,176 - QEN71_RS33535 0.37 -0.6 839,243 + QEN71_RS33535 0.43 -0.9 839,576 - QEN71_RS33535 0.73 +1.2 839,741 + QEN71_RS33535 0.88 -0.5 839,834 + -0.0 839,877 + -0.5 839,877 + +0.9 839,878 - -1.5 839,878 - -1.9 839,878 - +2.3 839,888 + -1.4 839,992 + -0.6 839,992 + -0.6 839,993 - -0.6 840,224 - QEN71_RS33540 0.45 +0.7 840,455 + QEN71_RS33540 0.87 -0.6 840,456 - QEN71_RS33540 0.87 -0.0 840,541 + +0.2 840,541 + +0.5 840,542 - -0.6 840,542 - -0.9 840,542 - -1.5 840,543 + -0.3 840,543 + -1.0 840,544 - -0.1 840,544 - -0.8 840,544 - -3.3 840,544 - +0.3 840,544 - +0.4 840,545 + +0.2 840,545 + +0.6 840,546 - +1.3 840,786 + QEN71_RS33545 0.25 +2.2 840,786 + QEN71_RS33545 0.25 -0.6 840,909 + QEN71_RS33545 0.40 +0.1 840,909 + QEN71_RS33545 0.40 +0.0 840,910 - QEN71_RS33545 0.40 -1.5 841,075 + QEN71_RS33545 0.60 -1.9 841,321 - -0.0 841,369 + +0.4 841,370 - -1.1
Or see this region's nucleotide sequence