Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28120

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28115 and QEN71_RS28120 are separated by 126 nucleotidesQEN71_RS28120 and QEN71_RS28125 overlap by 8 nucleotidesQEN71_RS28125 and QEN71_RS28130 are separated by 156 nucleotides QEN71_RS28115: QEN71_RS28115 - porphobilinogen synthase, at 6,253,112 to 6,254,110 _RS28115 QEN71_RS28120: QEN71_RS28120 - protein-disulfide reductase DsbD, at 6,254,237 to 6,256,090 _RS28120 QEN71_RS28125: QEN71_RS28125 - divalent-cation tolerance protein CutA, at 6,256,083 to 6,256,409 _RS28125 QEN71_RS28130: QEN71_RS28130 - 50S ribosomal protein L17, at 6,256,566 to 6,256,961 _RS28130 Position (kb) 6254 6255 6256 6257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6254.149 kb on + strandat 6254.149 kb on + strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6255.885 kb on + strand, within QEN71_RS28120at 6256.130 kb on - strand, within QEN71_RS28125at 6256.177 kb on + strand, within QEN71_RS28125at 6256.177 kb on + strand, within QEN71_RS28125at 6256.178 kb on - strand, within QEN71_RS28125at 6256.178 kb on - strand, within QEN71_RS28125at 6256.285 kb on + strand, within QEN71_RS28125at 6256.285 kb on + strand, within QEN71_RS28125at 6256.286 kb on - strand, within QEN71_RS28125at 6256.286 kb on - strand, within QEN71_RS28125at 6256.354 kb on - strand, within QEN71_RS28125at 6256.354 kb on - strand, within QEN71_RS28125at 6256.354 kb on - strand, within QEN71_RS28125at 6256.400 kb on + strandat 6256.400 kb on + strandat 6256.400 kb on + strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.401 kb on - strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.456 kb on + strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.457 kb on - strandat 6256.548 kb on + strandat 6256.548 kb on + strandat 6256.549 kb on - strandat 6256.549 kb on - strandat 6256.549 kb on - strandat 6256.549 kb on - strandat 6256.567 kb on + strandat 6256.567 kb on + strandat 6256.567 kb on + strandat 6256.567 kb on + strandat 6256.568 kb on - strandat 6256.568 kb on - strandat 6257.001 kb on - strandat 6257.001 kb on - strandat 6257.001 kb on - strandat 6257.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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6,254,149 + -0.5
6,254,149 + +0.5
6,254,150 - -1.2
6,254,150 - +0.1
6,254,150 - -0.4
6,254,150 - +0.3
6,254,150 - +0.2
6,255,885 + QEN71_RS28120 0.89 -0.3
6,256,130 - QEN71_RS28125 0.14 -0.0
6,256,177 + QEN71_RS28125 0.29 -0.5
6,256,177 + QEN71_RS28125 0.29 +0.1
6,256,178 - QEN71_RS28125 0.29 -0.0
6,256,178 - QEN71_RS28125 0.29 -0.6
6,256,285 + QEN71_RS28125 0.62 -2.7
6,256,285 + QEN71_RS28125 0.62 -0.1
6,256,286 - QEN71_RS28125 0.62 +0.8
6,256,286 - QEN71_RS28125 0.62 +0.1
6,256,354 - QEN71_RS28125 0.83 -1.0
6,256,354 - QEN71_RS28125 0.83 +0.7
6,256,354 - QEN71_RS28125 0.83 +0.3
6,256,400 + -1.4
6,256,400 + -2.4
6,256,400 + -2.9
6,256,401 - +0.3
6,256,401 - -1.4
6,256,401 - +0.0
6,256,401 - +0.5
6,256,401 - +1.3
6,256,401 - -2.1
6,256,401 - +0.1
6,256,401 - -0.1
6,256,456 + -0.3
6,256,456 + +1.6
6,256,456 + -1.0
6,256,456 + -0.4
6,256,456 + -0.4
6,256,456 + +2.3
6,256,456 + -0.9
6,256,456 + +0.3
6,256,456 + +2.3
6,256,456 + -0.6
6,256,456 + +0.7
6,256,456 + -0.7
6,256,456 + -2.2
6,256,456 + -0.0
6,256,456 + +0.2
6,256,457 - +0.3
6,256,457 - +0.9
6,256,457 - +0.1
6,256,457 - +0.7
6,256,457 - +1.1
6,256,457 - +1.4
6,256,457 - -0.7
6,256,457 - -0.7
6,256,457 - +0.1
6,256,457 - -0.4
6,256,457 - -0.9
6,256,457 - -0.4
6,256,457 - -0.3
6,256,457 - -0.7
6,256,457 - +0.1
6,256,457 - -0.8
6,256,457 - -1.9
6,256,457 - -0.0
6,256,548 + +1.1
6,256,548 + +0.9
6,256,549 - -1.6
6,256,549 - -0.3
6,256,549 - -1.4
6,256,549 - -1.1
6,256,567 + -1.0
6,256,567 + -0.5
6,256,567 + +0.1
6,256,567 + +2.0
6,256,568 - -0.6
6,256,568 - -0.0
6,257,001 - -0.2
6,257,001 - +0.5
6,257,001 - +0.5
6,257,061 - -0.1

Or see this region's nucleotide sequence