Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19610

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19605 and QEN71_RS19610 are separated by 168 nucleotidesQEN71_RS19610 and QEN71_RS19615 are separated by 120 nucleotidesQEN71_RS19615 and QEN71_RS19620 are separated by 27 nucleotides QEN71_RS19605: QEN71_RS19605 - PaaI family thioesterase, at 4,368,257 to 4,368,694 _RS19605 QEN71_RS19610: QEN71_RS19610 - UbiD family decarboxylase, at 4,368,863 to 4,370,320 _RS19610 QEN71_RS19615: QEN71_RS19615 - carbon monoxide dehydrogenase subunit G, at 4,370,441 to 4,371,076 _RS19615 QEN71_RS19620: QEN71_RS19620 - MFS transporter, at 4,371,104 to 4,372,519 _RS19620 Position (kb) 4368 4369 4370 4371Strain fitness (log2 ratio) -2 -1 0 1at 4368.440 kb on + strand, within QEN71_RS19605at 4368.440 kb on + strand, within QEN71_RS19605at 4368.440 kb on + strand, within QEN71_RS19605at 4368.440 kb on + strand, within QEN71_RS19605at 4368.440 kb on + strand, within QEN71_RS19605at 4368.440 kb on + strand, within QEN71_RS19605at 4368.441 kb on - strand, within QEN71_RS19605at 4368.441 kb on - strand, within QEN71_RS19605at 4368.635 kb on + strand, within QEN71_RS19605at 4368.777 kb on + strandat 4369.194 kb on - strand, within QEN71_RS19610at 4369.308 kb on - strand, within QEN71_RS19610at 4369.308 kb on - strand, within QEN71_RS19610at 4369.514 kb on + strand, within QEN71_RS19610at 4369.557 kb on - strand, within QEN71_RS19610at 4369.557 kb on - strand, within QEN71_RS19610at 4369.562 kb on + strand, within QEN71_RS19610at 4369.562 kb on + strand, within QEN71_RS19610at 4369.563 kb on - strand, within QEN71_RS19610at 4369.658 kb on + strand, within QEN71_RS19610at 4369.683 kb on + strand, within QEN71_RS19610at 4369.764 kb on - strand, within QEN71_RS19610at 4369.820 kb on + strand, within QEN71_RS19610at 4369.826 kb on + strand, within QEN71_RS19610at 4370.018 kb on + strand, within QEN71_RS19610at 4370.018 kb on + strand, within QEN71_RS19610at 4370.018 kb on + strand, within QEN71_RS19610at 4370.018 kb on + strand, within QEN71_RS19610at 4370.019 kb on - strand, within QEN71_RS19610at 4370.019 kb on - strand, within QEN71_RS19610at 4370.019 kb on - strand, within QEN71_RS19610at 4370.019 kb on - strand, within QEN71_RS19610at 4370.181 kb on - strandat 4370.360 kb on + strandat 4370.361 kb on - strandat 4370.361 kb on - strandat 4370.363 kb on - strandat 4370.660 kb on + strand, within QEN71_RS19615at 4371.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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4,368,440 + QEN71_RS19605 0.42 -0.5
4,368,440 + QEN71_RS19605 0.42 +0.7
4,368,440 + QEN71_RS19605 0.42 +0.2
4,368,440 + QEN71_RS19605 0.42 -0.3
4,368,440 + QEN71_RS19605 0.42 +0.3
4,368,440 + QEN71_RS19605 0.42 +0.5
4,368,441 - QEN71_RS19605 0.42 -0.6
4,368,441 - QEN71_RS19605 0.42 -0.1
4,368,635 + QEN71_RS19605 0.86 +1.2
4,368,777 + -1.3
4,369,194 - QEN71_RS19610 0.23 +0.5
4,369,308 - QEN71_RS19610 0.31 +0.1
4,369,308 - QEN71_RS19610 0.31 +0.7
4,369,514 + QEN71_RS19610 0.45 +0.2
4,369,557 - QEN71_RS19610 0.48 -0.4
4,369,557 - QEN71_RS19610 0.48 +0.0
4,369,562 + QEN71_RS19610 0.48 +0.2
4,369,562 + QEN71_RS19610 0.48 -2.0
4,369,563 - QEN71_RS19610 0.48 -1.6
4,369,658 + QEN71_RS19610 0.55 +1.4
4,369,683 + QEN71_RS19610 0.56 -0.4
4,369,764 - QEN71_RS19610 0.62 -1.4
4,369,820 + QEN71_RS19610 0.66 +0.9
4,369,826 + QEN71_RS19610 0.66 -0.8
4,370,018 + QEN71_RS19610 0.79 +1.3
4,370,018 + QEN71_RS19610 0.79 -0.4
4,370,018 + QEN71_RS19610 0.79 +0.6
4,370,018 + QEN71_RS19610 0.79 -0.2
4,370,019 - QEN71_RS19610 0.79 +0.0
4,370,019 - QEN71_RS19610 0.79 +1.0
4,370,019 - QEN71_RS19610 0.79 +1.2
4,370,019 - QEN71_RS19610 0.79 -0.3
4,370,181 - +0.9
4,370,360 + +0.4
4,370,361 - +1.6
4,370,361 - -0.7
4,370,363 - -0.4
4,370,660 + QEN71_RS19615 0.34 -0.7
4,371,062 + -0.4

Or see this region's nucleotide sequence