Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09555

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09545 and QEN71_RS09550 overlap by 8 nucleotidesQEN71_RS09550 and QEN71_RS09555 are separated by 26 nucleotidesQEN71_RS09555 and QEN71_RS09560 are separated by 252 nucleotidesQEN71_RS09560 and QEN71_RS09565 are separated by 291 nucleotides QEN71_RS09545: QEN71_RS09545 - Dyp-type peroxidase, at 2,135,622 to 2,136,689 _RS09545 QEN71_RS09550: QEN71_RS09550 - family 1 encapsulin nanocompartment shell protein, at 2,136,682 to 2,137,485 _RS09550 QEN71_RS09555: QEN71_RS09555 - TetR/AcrR family transcriptional regulator, at 2,137,512 to 2,138,093 _RS09555 QEN71_RS09560: QEN71_RS09560 - antibiotic biosynthesis monooxygenase, at 2,138,346 to 2,138,696 _RS09560 QEN71_RS09565: QEN71_RS09565 - alpha/beta hydrolase, at 2,138,988 to 2,139,851 _RS09565 Position (kb) 2137 2138 2139Strain fitness (log2 ratio) -2 -1 0 1 2at 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.621 kb on - strandat 2136.681 kb on + strandat 2136.682 kb on - strandat 2137.018 kb on + strand, within QEN71_RS09550at 2137.018 kb on + strand, within QEN71_RS09550at 2137.186 kb on + strand, within QEN71_RS09550at 2137.213 kb on + strand, within QEN71_RS09550at 2137.213 kb on + strand, within QEN71_RS09550at 2137.213 kb on + strand, within QEN71_RS09550at 2137.214 kb on - strand, within QEN71_RS09550at 2137.483 kb on + strandat 2137.484 kb on - strandat 2137.960 kb on + strand, within QEN71_RS09555at 2137.960 kb on + strand, within QEN71_RS09555at 2138.124 kb on - strandat 2138.357 kb on + strandat 2138.357 kb on + strandat 2138.469 kb on + strand, within QEN71_RS09560at 2138.550 kb on + strand, within QEN71_RS09560at 2138.580 kb on + strand, within QEN71_RS09560at 2138.945 kb on + strandat 2138.945 kb on + strandat 2139.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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2,136,620 + -1.3
2,136,620 + +0.3
2,136,620 + -0.8
2,136,620 + +0.4
2,136,620 + -1.1
2,136,620 + +2.4
2,136,620 + -0.2
2,136,620 + -0.1
2,136,620 + -0.4
2,136,620 + -2.5
2,136,621 - +1.0
2,136,681 + -0.1
2,136,682 - +1.9
2,137,018 + QEN71_RS09550 0.42 +0.0
2,137,018 + QEN71_RS09550 0.42 -1.1
2,137,186 + QEN71_RS09550 0.63 -1.8
2,137,213 + QEN71_RS09550 0.66 -1.6
2,137,213 + QEN71_RS09550 0.66 -0.1
2,137,213 + QEN71_RS09550 0.66 +0.9
2,137,214 - QEN71_RS09550 0.66 +2.7
2,137,483 + -0.8
2,137,484 - -1.5
2,137,960 + QEN71_RS09555 0.77 +1.0
2,137,960 + QEN71_RS09555 0.77 -0.8
2,138,124 - -0.4
2,138,357 + +0.2
2,138,357 + -0.4
2,138,469 + QEN71_RS09560 0.35 +1.5
2,138,550 + QEN71_RS09560 0.58 -0.8
2,138,580 + QEN71_RS09560 0.67 -0.5
2,138,945 + +1.1
2,138,945 + -1.9
2,139,039 + -1.3

Or see this region's nucleotide sequence