Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08785

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08775 and QEN71_RS08780 are separated by 1 nucleotidesQEN71_RS08780 and QEN71_RS08785 are separated by 240 nucleotidesQEN71_RS08785 and QEN71_RS08790 overlap by 4 nucleotidesQEN71_RS08790 and QEN71_RS08795 are separated by 315 nucleotides QEN71_RS08775: QEN71_RS08775 - cobalt-precorrin-6A reductase, at 1,972,101 to 1,972,832 _RS08775 QEN71_RS08780: QEN71_RS08780 - precorrin-4 C(11)-methyltransferase, at 1,972,834 to 1,973,565 _RS08780 QEN71_RS08785: QEN71_RS08785 - sodium:solute symporter, at 1,973,806 to 1,975,284 _RS08785 QEN71_RS08790: QEN71_RS08790 - DUF3311 domain-containing protein, at 1,975,281 to 1,975,493 _RS08790 QEN71_RS08795: QEN71_RS08795 - MarC family protein, at 1,975,809 to 1,976,480 _RS08795 Position (kb) 1973 1974 1975 1976Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1972.908 kb on + strand, within QEN71_RS08780at 1972.908 kb on + strand, within QEN71_RS08780at 1972.908 kb on + strand, within QEN71_RS08780at 1973.025 kb on - strand, within QEN71_RS08780at 1973.025 kb on - strand, within QEN71_RS08780at 1973.057 kb on + strand, within QEN71_RS08780at 1973.057 kb on + strand, within QEN71_RS08780at 1973.216 kb on + strand, within QEN71_RS08780at 1973.217 kb on - strand, within QEN71_RS08780at 1973.242 kb on + strand, within QEN71_RS08780at 1973.242 kb on + strand, within QEN71_RS08780at 1973.242 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.399 kb on - strand, within QEN71_RS08780at 1973.462 kb on + strand, within QEN71_RS08780at 1973.463 kb on - strand, within QEN71_RS08780at 1973.492 kb on + strandat 1973.493 kb on - strandat 1973.545 kb on + strandat 1973.545 kb on + strandat 1973.545 kb on + strandat 1973.546 kb on - strandat 1973.546 kb on - strandat 1973.592 kb on - strandat 1973.702 kb on + strandat 1973.814 kb on + strandat 1973.815 kb on - strandat 1973.862 kb on + strandat 1973.863 kb on - strandat 1973.979 kb on + strand, within QEN71_RS08785at 1974.057 kb on + strand, within QEN71_RS08785at 1974.057 kb on + strand, within QEN71_RS08785at 1974.057 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.095 kb on + strand, within QEN71_RS08785at 1974.210 kb on + strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.403 kb on + strand, within QEN71_RS08785at 1974.403 kb on + strand, within QEN71_RS08785at 1974.458 kb on + strand, within QEN71_RS08785at 1974.459 kb on - strand, within QEN71_RS08785at 1974.528 kb on + strand, within QEN71_RS08785at 1974.529 kb on - strand, within QEN71_RS08785at 1974.529 kb on - strand, within QEN71_RS08785at 1974.668 kb on + strand, within QEN71_RS08785at 1974.669 kb on - strand, within QEN71_RS08785at 1974.669 kb on - strand, within QEN71_RS08785at 1974.686 kb on + strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.944 kb on + strand, within QEN71_RS08785at 1975.034 kb on + strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.050 kb on - strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.062 kb on - strand, within QEN71_RS08785at 1975.062 kb on - strand, within QEN71_RS08785at 1975.062 kb on - strand, within QEN71_RS08785at 1975.064 kb on + strand, within QEN71_RS08785at 1975.064 kb on + strand, within QEN71_RS08785at 1975.085 kb on + strand, within QEN71_RS08785at 1975.226 kb on - strandat 1975.235 kb on + strandat 1975.235 kb on + strandat 1975.235 kb on + strandat 1975.236 kb on - strandat 1975.236 kb on - strandat 1975.236 kb on - strandat 1975.336 kb on + strand, within QEN71_RS08790at 1975.337 kb on - strand, within QEN71_RS08790at 1975.337 kb on - strand, within QEN71_RS08790at 1975.627 kb on + strandat 1975.628 kb on - strandat 1975.628 kb on - strandat 1975.639 kb on + strandat 1975.701 kb on + strandat 1975.701 kb on + strandat 1975.701 kb on + strandat 1975.702 kb on - strandat 1975.702 kb on - strandat 1975.702 kb on - strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.738 kb on - strandat 1975.738 kb on - strandat 1975.738 kb on - strandat 1975.739 kb on + strandat 1975.739 kb on + strandat 1975.739 kb on + strandat 1975.740 kb on - strandat 1975.740 kb on - strandat 1975.740 kb on - strandat 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.985 kb on - strand, within QEN71_RS08795at 1975.985 kb on - strand, within QEN71_RS08795

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,972,908 + QEN71_RS08780 0.10 +0.9
1,972,908 + QEN71_RS08780 0.10 -0.5
1,972,908 + QEN71_RS08780 0.10 -0.2
1,973,025 - QEN71_RS08780 0.26 +0.3
1,973,025 - QEN71_RS08780 0.26 -0.4
1,973,057 + QEN71_RS08780 0.30 -1.8
1,973,057 + QEN71_RS08780 0.30 +0.2
1,973,216 + QEN71_RS08780 0.52 -2.1
1,973,217 - QEN71_RS08780 0.52 +0.1
1,973,242 + QEN71_RS08780 0.56 -0.5
1,973,242 + QEN71_RS08780 0.56 -0.2
1,973,242 + QEN71_RS08780 0.56 -1.0
1,973,315 + QEN71_RS08780 0.66 +0.1
1,973,315 + QEN71_RS08780 0.66 +0.1
1,973,315 + QEN71_RS08780 0.66 -0.5
1,973,315 + QEN71_RS08780 0.66 +0.3
1,973,315 + QEN71_RS08780 0.66 +0.2
1,973,316 - QEN71_RS08780 0.66 -0.1
1,973,316 - QEN71_RS08780 0.66 +0.1
1,973,316 - QEN71_RS08780 0.66 +0.6
1,973,316 - QEN71_RS08780 0.66 +0.5
1,973,316 - QEN71_RS08780 0.66 -0.5
1,973,399 - QEN71_RS08780 0.77 -0.3
1,973,462 + QEN71_RS08780 0.86 -1.0
1,973,463 - QEN71_RS08780 0.86 +0.0
1,973,492 + +0.9
1,973,493 - -0.1
1,973,545 + -1.5
1,973,545 + +0.4
1,973,545 + +0.7
1,973,546 - -0.7
1,973,546 - -0.8
1,973,592 - -0.7
1,973,702 + -0.5
1,973,814 + -0.1
1,973,815 - -2.4
1,973,862 + -0.0
1,973,863 - +1.6
1,973,979 + QEN71_RS08785 0.12 -0.2
1,974,057 + QEN71_RS08785 0.17 -0.1
1,974,057 + QEN71_RS08785 0.17 +0.1
1,974,057 + QEN71_RS08785 0.17 -0.1
1,974,093 + QEN71_RS08785 0.19 -0.7
1,974,093 + QEN71_RS08785 0.19 -0.3
1,974,093 + QEN71_RS08785 0.19 -0.4
1,974,093 + QEN71_RS08785 0.19 +0.7
1,974,094 - QEN71_RS08785 0.19 -1.0
1,974,094 - QEN71_RS08785 0.19 +0.1
1,974,094 - QEN71_RS08785 0.19 -0.6
1,974,094 - QEN71_RS08785 0.19 -0.5
1,974,094 - QEN71_RS08785 0.19 +0.0
1,974,095 + QEN71_RS08785 0.20 -0.0
1,974,210 + QEN71_RS08785 0.27 -0.0
1,974,211 - QEN71_RS08785 0.27 +1.2
1,974,211 - QEN71_RS08785 0.27 -0.0
1,974,211 - QEN71_RS08785 0.27 +0.3
1,974,211 - QEN71_RS08785 0.27 -2.3
1,974,293 - QEN71_RS08785 0.33 -0.7
1,974,293 - QEN71_RS08785 0.33 -0.2
1,974,293 - QEN71_RS08785 0.33 -0.7
1,974,293 - QEN71_RS08785 0.33 -0.3
1,974,403 + QEN71_RS08785 0.40 +0.5
1,974,403 + QEN71_RS08785 0.40 +0.5
1,974,458 + QEN71_RS08785 0.44 -0.1
1,974,459 - QEN71_RS08785 0.44 -0.5
1,974,528 + QEN71_RS08785 0.49 -0.1
1,974,529 - QEN71_RS08785 0.49 -0.5
1,974,529 - QEN71_RS08785 0.49 -0.8
1,974,668 + QEN71_RS08785 0.58 -0.9
1,974,669 - QEN71_RS08785 0.58 -0.3
1,974,669 - QEN71_RS08785 0.58 -0.2
1,974,686 + QEN71_RS08785 0.59 -0.5
1,974,687 - QEN71_RS08785 0.60 -1.1
1,974,687 - QEN71_RS08785 0.60 +2.5
1,974,687 - QEN71_RS08785 0.60 -2.9
1,974,687 - QEN71_RS08785 0.60 -0.1
1,974,776 + QEN71_RS08785 0.66 -0.4
1,974,776 + QEN71_RS08785 0.66 -0.3
1,974,776 + QEN71_RS08785 0.66 +1.1
1,974,776 + QEN71_RS08785 0.66 -0.7
1,974,776 + QEN71_RS08785 0.66 -0.1
1,974,777 - QEN71_RS08785 0.66 +0.1
1,974,777 - QEN71_RS08785 0.66 -0.1
1,974,777 - QEN71_RS08785 0.66 -0.5
1,974,777 - QEN71_RS08785 0.66 -0.5
1,974,777 - QEN71_RS08785 0.66 +0.8
1,974,777 - QEN71_RS08785 0.66 -0.8
1,974,777 - QEN71_RS08785 0.66 -0.1
1,974,777 - QEN71_RS08785 0.66 -2.7
1,974,944 + QEN71_RS08785 0.77 +0.2
1,975,034 + QEN71_RS08785 0.83 -1.4
1,975,035 - QEN71_RS08785 0.83 -0.1
1,975,035 - QEN71_RS08785 0.83 -0.4
1,975,035 - QEN71_RS08785 0.83 -0.3
1,975,035 - QEN71_RS08785 0.83 -0.4
1,975,050 - QEN71_RS08785 0.84 +0.2
1,975,061 + QEN71_RS08785 0.85 +0.3
1,975,061 + QEN71_RS08785 0.85 +0.3
1,975,061 + QEN71_RS08785 0.85 -0.1
1,975,061 + QEN71_RS08785 0.85 -0.1
1,975,061 + QEN71_RS08785 0.85 +0.4
1,975,062 - QEN71_RS08785 0.85 -0.5
1,975,062 - QEN71_RS08785 0.85 -2.4
1,975,062 - QEN71_RS08785 0.85 +1.6
1,975,064 + QEN71_RS08785 0.85 -1.6
1,975,064 + QEN71_RS08785 0.85 -0.8
1,975,085 + QEN71_RS08785 0.86 -0.6
1,975,226 - -1.4
1,975,235 + -0.9
1,975,235 + +0.4
1,975,235 + +0.2
1,975,236 - +0.1
1,975,236 - +0.6
1,975,236 - -0.6
1,975,336 + QEN71_RS08790 0.26 +0.1
1,975,337 - QEN71_RS08790 0.26 -0.5
1,975,337 - QEN71_RS08790 0.26 +0.2
1,975,627 + -0.9
1,975,628 - -1.3
1,975,628 - +0.6
1,975,639 + -0.5
1,975,701 + +0.2
1,975,701 + +0.1
1,975,701 + +0.4
1,975,702 - +0.1
1,975,702 - -0.3
1,975,702 - -0.0
1,975,737 + +0.8
1,975,737 + -0.7
1,975,737 + -0.7
1,975,737 + -0.2
1,975,737 + -0.1
1,975,737 + +0.4
1,975,738 - -1.5
1,975,738 - -0.4
1,975,738 - +0.4
1,975,739 + +0.0
1,975,739 + +0.6
1,975,739 + +0.0
1,975,740 - -1.9
1,975,740 - -0.4
1,975,740 - -1.8
1,975,984 + QEN71_RS08795 0.26 -0.3
1,975,984 + QEN71_RS08795 0.26 -0.2
1,975,984 + QEN71_RS08795 0.26 -0.7
1,975,984 + QEN71_RS08795 0.26 -1.0
1,975,984 + QEN71_RS08795 0.26 -0.1
1,975,985 - QEN71_RS08795 0.26 -0.9
1,975,985 - QEN71_RS08795 0.26 -0.3

Or see this region's nucleotide sequence