Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01325

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01315 and QEN71_RS01320 are separated by 73 nucleotidesQEN71_RS01320 and QEN71_RS01325 are separated by 13 nucleotidesQEN71_RS01325 and QEN71_RS01330 are separated by 239 nucleotides QEN71_RS01315: QEN71_RS01315 - DUF2917 domain-containing protein, at 295,530 to 295,856 _RS01315 QEN71_RS01320: QEN71_RS01320 - lipoyl(octanoyl) transferase LipB, at 295,930 to 296,697 _RS01320 QEN71_RS01325: QEN71_RS01325 - lipoyl synthase, at 296,711 to 297,712 _RS01325 QEN71_RS01330: QEN71_RS01330 - Na/Pi cotransporter family protein, at 297,952 to 299,634 _RS01330 Position (kb) 296 297 298Strain fitness (log2 ratio) -2 -1 0 1at 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 297.726 kb on + strandat 297.793 kb on + strandat 297.794 kb on - strandat 297.794 kb on - strandat 297.839 kb on + strandat 297.840 kb on - strandat 297.865 kb on + strandat 297.865 kb on + strandat 297.865 kb on + strandat 297.865 kb on + strandat 297.951 kb on + strandat 297.951 kb on + strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 298.008 kb on + strandat 298.008 kb on + strandat 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.508 kb on - strand, within QEN71_RS01330

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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295,877 + -0.9
295,877 + -1.2
295,877 + -0.4
295,877 + +0.2
295,877 + -0.1
295,877 + -1.0
295,877 + -0.7
295,877 + -0.3
295,877 + +0.7
295,878 - -0.4
295,878 - +0.0
295,878 - -1.4
295,878 - +0.8
295,878 - +1.3
295,878 - -1.7
295,878 - -0.0
295,878 - -0.8
295,878 - -0.4
295,878 - -0.8
295,878 - -0.5
295,878 - +0.0
297,726 + +0.6
297,793 + +0.5
297,794 - -0.6
297,794 - -2.3
297,839 + -0.2
297,840 - +0.1
297,865 + +0.5
297,865 + -0.3
297,865 + +0.6
297,865 + -1.1
297,951 + -1.0
297,951 + -1.2
297,952 - -0.3
297,952 - +0.4
297,952 - +0.1
297,952 - -0.5
297,952 - -1.1
297,952 - +0.6
298,008 + +0.3
298,008 + +0.1
298,177 - QEN71_RS01330 0.13 +0.0
298,177 - QEN71_RS01330 0.13 +0.7
298,177 - QEN71_RS01330 0.13 -0.5
298,177 - QEN71_RS01330 0.13 -0.4
298,177 - QEN71_RS01330 0.13 +0.5
298,177 - QEN71_RS01330 0.13 +0.3
298,177 - QEN71_RS01330 0.13 -0.1
298,508 - QEN71_RS01330 0.33 -0.1

Or see this region's nucleotide sequence