Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03995

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
4,480,410	-		MIT1002_03993	0.83	+0.5
4,480,410	-		MIT1002_03993	0.83	-2.3
4,480,432	+		MIT1002_03993	0.85	-1.0
4,480,506	+				+0.3
4,480,519	-				-0.7
4,480,530	-				+0.3
4,480,580	+				+0.8
4,480,580	+				-0.5
4,480,580	+				+0.7
4,480,580	+				+0.7
4,480,580	+				+1.0
4,480,588	-				+0.9
4,480,590	+				+0.4
4,480,590	+				+0.2
4,480,598	-				+1.3
4,480,679	+				-1.7
4,480,687	-				+1.1
4,480,689	+				-0.3
4,480,725	+				-0.3
4,480,758	+		MIT1002_03994	0.13	-0.3
4,480,766	-		MIT1002_03994	0.14	-1.2
4,480,839	+		MIT1002_03994	0.27	-1.1
4,480,855	+		MIT1002_03994	0.30	+0.4
4,480,863	+		MIT1002_03994	0.31	-0.7
4,480,907	+		MIT1002_03994	0.38	-1.1
4,480,997	-		MIT1002_03994	0.54	-0.8
4,481,103	+		MIT1002_03994	0.72	-0.1
4,481,110	+		MIT1002_03994	0.73	-0.3
4,481,112	+		MIT1002_03994	0.74	-0.2
4,481,163	+		MIT1002_03994	0.82	+0.4
4,481,163	+		MIT1002_03994	0.82	-0.5
4,481,171	-		MIT1002_03994	0.84	+0.2
4,481,378	-				-1.1
4,481,391	+				-1.3
4,481,391	+				-2.4
4,481,399	-				+1.5
4,481,421	-				-1.1
4,481,451	-				-0.9
4,481,485	+				+1.2
4,481,488	-				+1.2
4,481,493	-				-0.9
4,481,540	-				+1.1
4,481,555	+				-0.7
4,481,593	+		MIT1002_03995	0.11	+0.1
4,481,601	-		MIT1002_03995	0.11	+0.7
4,481,603	+		MIT1002_03995	0.11	-0.6
4,481,603	+		MIT1002_03995	0.11	+1.4
4,481,643	+		MIT1002_03995	0.13	+0.8
4,481,670	-		MIT1002_03995	0.14	-0.9
4,481,695	-		MIT1002_03995	0.16	+0.3
4,481,709	+		MIT1002_03995	0.16	-1.4
4,481,787	+		MIT1002_03995	0.20	-0.3
4,481,788	-		MIT1002_03995	0.20	+0.9
4,481,953	+		MIT1002_03995	0.29	+0.4
4,481,953	+		MIT1002_03995	0.29	+0.4
4,481,972	-		MIT1002_03995	0.30	-0.1
4,482,054	-		MIT1002_03995	0.34	-1.2
4,482,115	+		MIT1002_03995	0.37	-0.1
4,482,115	-		MIT1002_03995	0.37	-0.7
4,482,189	-		MIT1002_03995	0.41	+0.0
4,482,213	-		MIT1002_03995	0.42	+0.7
4,482,213	-		MIT1002_03995	0.42	+0.6
4,482,230	+		MIT1002_03995	0.43	-3.7
4,482,235	+		MIT1002_03995	0.43	-1.1
4,482,243	-		MIT1002_03995	0.43	-0.2
4,482,248	-		MIT1002_03995	0.43	-1.7
4,482,248	-		MIT1002_03995	0.43	+0.1
4,482,285	+		MIT1002_03995	0.45	-0.6
4,482,304	-		MIT1002_03995	0.46	+0.0
4,482,356	-		MIT1002_03995	0.49	-1.7
4,482,356	-		MIT1002_03995	0.49	+0.6
4,482,487	-		MIT1002_03995	0.55	+0.6
4,482,512	-		MIT1002_03995	0.57	-0.7
4,482,592	+		MIT1002_03995	0.61	-0.6
4,482,597	+		MIT1002_03995	0.61	+0.3
4,482,605	-		MIT1002_03995	0.61	-2.7
4,482,605	-		MIT1002_03995	0.61	-0.5
4,482,626	+		MIT1002_03995	0.62	-0.4
4,482,800	+		MIT1002_03995	0.71	-0.7
4,482,808	-		MIT1002_03995	0.72	-1.8
4,482,911	+		MIT1002_03995	0.77	+0.6
4,482,932	+		MIT1002_03995	0.78	-0.1
4,483,051	-		MIT1002_03995	0.84	+0.8
4,483,051	-		MIT1002_03995	0.84	-0.2
4,483,052	-		MIT1002_03995	0.84	-0.9
4,483,124	+		MIT1002_03995	0.87	-0.9
4,483,124	+		MIT1002_03995	0.87	-1.9
4,483,125	+		MIT1002_03995	0.88	+1.8
4,483,132	-		MIT1002_03995	0.88	-0.0
4,483,132	-		MIT1002_03995	0.88	+0.2
4,483,201	-				+0.5
4,483,259	-				-0.3
4,483,308	-				+0.9
4,483,318	+				-1.5
4,483,318	+				+0.6
4,483,318	+				-0.1
4,483,326	-				+0.1
4,483,326	-				+0.1
4,483,329	+				-0.8
4,483,329	+				-0.2
4,483,337	-				-0.1
4,483,383	+				-0.5
4,483,394	+				+0.1
4,483,412	+				+0.8
4,483,412	+				-0.9
4,483,412	+				-1.4
4,483,531	-		MIT1002_03996	0.11	+0.0
4,483,597	+		MIT1002_03996	0.15	+0.1
4,483,605	-		MIT1002_03996	0.15	-0.9
4,483,652	+		MIT1002_03996	0.18	-1.3
4,483,674	+		MIT1002_03996	0.20	+0.1
4,483,682	-		MIT1002_03996	0.20	+0.1
4,483,684	-		MIT1002_03996	0.20	-3.0
4,483,684	-		MIT1002_03996	0.20	+0.8
4,483,684	-		MIT1002_03996	0.20	-0.5
4,483,689	-		MIT1002_03996	0.21	+0.5
4,483,762	+		MIT1002_03996	0.25	-0.7
4,483,827	+		MIT1002_03996	0.29	+0.3
4,483,930	+		MIT1002_03996	0.35	-2.8
4,483,957	-		MIT1002_03996	0.37	+0.9
4,483,957	-		MIT1002_03996	0.37	+0.4
4,483,979	+		MIT1002_03996	0.38	-0.4
4,483,987	-		MIT1002_03996	0.39	-0.7
4,484,035	+		MIT1002_03996	0.42	-1.6
4,484,046	-		MIT1002_03996	0.43	-0.9
4,484,056	+		MIT1002_03996	0.43	+1.3
4,484,064	+		MIT1002_03996	0.44	-1.1
4,484,064	+		MIT1002_03996	0.44	+0.2
4,484,064	+		MIT1002_03996	0.44	+0.1
4,484,072	-		MIT1002_03996	0.44	-0.5
4,484,098	+		MIT1002_03996	0.46	-0.2
4,484,106	-		MIT1002_03996	0.46	+1.7
4,484,120	+		MIT1002_03996	0.47	-0.6
4,484,130	+		MIT1002_03996	0.48	-0.3
4,484,130	+		MIT1002_03996	0.48	+0.7
4,484,130	+		MIT1002_03996	0.48	-1.8
4,484,138	-		MIT1002_03996	0.48	+0.5
4,484,138	-		MIT1002_03996	0.48	-0.3
4,484,176	+		MIT1002_03996	0.51	+1.4
4,484,181	+		MIT1002_03996	0.51	-0.0
4,484,206	-		MIT1002_03996	0.52	-0.0
4,484,262	+		MIT1002_03996	0.56	-0.2
4,484,262	+		MIT1002_03996	0.56	+1.9
4,484,272	-		MIT1002_03996	0.56	-0.1
4,484,278	-		MIT1002_03996	0.57	+1.0
4,484,294	+		MIT1002_03996	0.58	+1.1
4,484,297	-		MIT1002_03996	0.58	-0.1
4,484,327	+		MIT1002_03996	0.60	+0.9