Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03005

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
3,348,772	-		MIT1002_03004	0.16	-1.3
3,348,828	-		MIT1002_03004	0.23	+2.2
3,348,838	-		MIT1002_03004	0.24	-0.0
3,348,838	-		MIT1002_03004	0.24	-0.3
3,348,838	-		MIT1002_03004	0.24	-0.5
3,348,877	-		MIT1002_03004	0.30	-3.8
3,348,880	-		MIT1002_03004	0.30	-0.9
3,348,923	-		MIT1002_03004	0.36	+0.5
3,348,940	-		MIT1002_03004	0.38	-0.3
3,348,971	+		MIT1002_03004	0.42	-2.1
3,349,004	-		MIT1002_03004	0.47	-0.7
3,349,013	-		MIT1002_03004	0.48	-0.1
3,349,015	+		MIT1002_03004	0.48	+1.1
3,349,023	-		MIT1002_03004	0.49	-2.8
3,349,044	-		MIT1002_03004	0.52	-1.1
3,349,044	-		MIT1002_03004	0.52	-1.7
3,349,062	+		MIT1002_03004	0.54	-0.4
3,349,070	-		MIT1002_03004	0.56	+0.2
3,349,137	+		MIT1002_03004	0.65	+0.7
3,349,167	-		MIT1002_03004	0.69	-0.1
3,349,180	-		MIT1002_03004	0.70	-1.9
3,349,209	+		MIT1002_03004	0.74	+0.8
3,349,233	-		MIT1002_03004	0.77	-2.7
3,349,273	-		MIT1002_03004	0.83	-0.3
3,349,320	-		MIT1002_03004	0.89	-1.6
3,349,330	-				+0.3
3,349,405	-				+0.1
3,349,569	+				-0.8
3,349,587	-				+0.0
3,349,675	+				-2.1
3,349,735	-				+1.1
3,349,779	+				-0.5
3,349,779	+				+0.5
3,349,779	+				-2.0
3,349,859	-		MIT1002_03005	0.10	-1.4
3,349,876	+		MIT1002_03005	0.12	-0.2
3,349,887	-		MIT1002_03005	0.13	+0.2
3,349,964	-		MIT1002_03005	0.22	-0.4
3,350,027	-		MIT1002_03005	0.29	-0.8
3,350,101	-		MIT1002_03005	0.37	-0.4
3,350,101	-		MIT1002_03005	0.37	+0.9
3,350,103	+		MIT1002_03005	0.37	-1.8
3,350,109	-		MIT1002_03005	0.38	+0.3
3,350,134	+		MIT1002_03005	0.41	-0.5
3,350,142	-		MIT1002_03005	0.42	+0.0
3,350,219	-		MIT1002_03005	0.50	-0.1
3,350,219	-		MIT1002_03005	0.50	-0.4
3,350,224	-		MIT1002_03005	0.51	-0.5
3,350,264	+		MIT1002_03005	0.55	+0.5
3,350,264	+		MIT1002_03005	0.55	-0.8
3,350,303	-		MIT1002_03005	0.59	-0.4
3,350,303	-		MIT1002_03005	0.59	-0.1
3,350,318	+		MIT1002_03005	0.61	+1.3
3,350,319	-		MIT1002_03005	0.61	+0.0
3,350,319	-		MIT1002_03005	0.61	+1.2
3,350,400	+		MIT1002_03005	0.70	-1.2
3,350,401	-		MIT1002_03005	0.70	+1.2
3,350,439	+		MIT1002_03005	0.74	+0.4
3,350,440	-		MIT1002_03005	0.75	+1.1
3,350,449	+		MIT1002_03005	0.76	-0.4
3,350,525	-		MIT1002_03005	0.84	-0.4
3,350,525	-		MIT1002_03005	0.84	+2.0
3,350,592	+				+0.3
3,350,743	-				-0.1
3,350,759	-				+1.6
3,350,761	+				-0.3
3,350,795	+		MIT1002_03006	0.15	+0.7
3,350,809	-		MIT1002_03006	0.18	+3.3
3,350,822	-		MIT1002_03006	0.20	+0.1
3,350,869	+		MIT1002_03006	0.29	-0.3
3,350,875	-		MIT1002_03006	0.30	+1.1
3,350,875	-		MIT1002_03006	0.30	-0.0
3,350,877	-		MIT1002_03006	0.31	-0.5
3,350,887	+		MIT1002_03006	0.32	-0.7
3,350,887	+		MIT1002_03006	0.32	+0.4
3,350,887	-		MIT1002_03006	0.32	-0.0
3,350,887	-		MIT1002_03006	0.32	-1.2
3,350,895	-		MIT1002_03006	0.34	-0.5
3,350,908	-		MIT1002_03006	0.36	-0.1
3,350,990	+		MIT1002_03006	0.51	+0.8
3,351,006	-		MIT1002_03006	0.54	-0.6
3,351,022	-		MIT1002_03006	0.57	-0.5
3,351,086	-		MIT1002_03006	0.69	-0.3
3,351,091	+		MIT1002_03006	0.70	-0.8
3,351,146	-		MIT1002_03006	0.80	+1.1
3,351,185	-		MIT1002_03006	0.88	-0.7
3,351,204	-				+0.4
3,351,233	-				+1.0
3,351,256	-				+1.1
3,351,294	-				-0.5
3,351,307	+				-0.2
3,351,317	+				-0.9
3,351,317	+				+0.1
3,351,317	+				+0.6
3,351,317	+				+0.4
3,351,317	+				-0.6
3,351,319	+				+0.1
3,351,320	-				+0.2
3,351,325	-				+0.7
3,351,325	-				+1.9
3,351,325	-				-0.5
3,351,325	-				+0.6
3,351,325	-				+0.8
3,351,325	-				+0.4
3,351,571	+		MIT1002_03007	0.26	+0.5
3,351,571	+		MIT1002_03007	0.26	-0.3
3,351,650	-		MIT1002_03007	0.41	-0.5