Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02678

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
2,979,773	-		MIT1002_02677	0.72	-0.1
2,979,830	+		MIT1002_02677	0.74	-4.6
2,979,853	+		MIT1002_02677	0.75	-3.9
2,979,853	+		MIT1002_02677	0.75	-2.3
2,979,881	+		MIT1002_02677	0.76	-1.9
2,979,881	+		MIT1002_02677	0.76	-2.7
2,979,889	-		MIT1002_02677	0.77	-2.0
2,979,920	-		MIT1002_02677	0.78	+0.2
2,979,961	+		MIT1002_02677	0.79	-1.4
2,979,966	+		MIT1002_02677	0.80	-0.6
2,979,966	+		MIT1002_02677	0.80	-1.0
2,980,038	-		MIT1002_02677	0.82	-2.3
2,980,104	-		MIT1002_02677	0.85	-3.5
2,980,204	-		MIT1002_02677	0.89	-0.3
2,980,204	-		MIT1002_02677	0.89	-2.0
2,980,233	+				-2.1
2,980,241	-				-1.2
2,980,245	-				-1.1
2,980,263	-				-3.2
2,980,263	-				-0.3
2,980,289	-				-2.0
2,980,296	+				-0.9
2,980,296	+				-0.5
2,980,301	+				-1.6
2,980,301	+				-2.2
2,980,304	-				-2.1
2,980,309	-				-1.2
2,980,311	-				-3.2
2,980,342	+				-2.3
2,980,370	+				-1.8
2,980,512	+				-1.9
2,980,521	-				-0.6
2,980,567	+				-2.6
2,980,567	+				-1.5
2,980,569	+				-1.2
2,980,717	-				-0.4
2,980,717	-				+0.4
2,980,747	+				+1.3
2,980,755	-				+0.4
2,980,755	-				-0.1
2,980,830	+		MIT1002_02678	0.12	-1.7
2,980,836	+		MIT1002_02678	0.13	+1.4
2,980,916	+		MIT1002_02678	0.23	-0.7
2,980,935	-		MIT1002_02678	0.26	-0.6
2,980,990	-		MIT1002_02678	0.33	-0.8
2,981,087	+		MIT1002_02678	0.46	-1.0
2,981,087	+		MIT1002_02678	0.46	-2.4
2,981,087	+		MIT1002_02678	0.46	+0.3
2,981,095	-		MIT1002_02678	0.47	-0.6
2,981,104	-		MIT1002_02678	0.48	-1.6
2,981,255	+		MIT1002_02678	0.68	-1.8
2,981,302	+		MIT1002_02678	0.74	-0.0
2,981,334	+		MIT1002_02678	0.79	-0.5
2,981,386	+		MIT1002_02678	0.86	-1.8
2,981,411	-		MIT1002_02678	0.89	-0.2
2,981,432	-				+0.4
2,981,433	-				+1.2
2,981,447	-				-0.9
2,981,464	+				-1.2
2,981,472	-				-1.6
2,981,509	-				-0.7
2,981,554	+				-1.0
2,981,575	+				-3.8
2,981,620	+		MIT1002_02679	0.11	-2.1
2,981,761	-		MIT1002_02679	0.25	-1.8
2,981,786	-		MIT1002_02679	0.28	-2.8
2,981,866	+		MIT1002_02679	0.36	-1.6
2,981,866	+		MIT1002_02679	0.36	-2.2
2,981,875	+		MIT1002_02679	0.37	-1.6
2,982,046	+		MIT1002_02679	0.54	-3.1
2,982,048	+		MIT1002_02679	0.55	-3.2
2,982,148	-		MIT1002_02679	0.65	-3.1
2,982,218	-		MIT1002_02679	0.72	-2.1
2,982,350	-		MIT1002_02679	0.85	-0.9