Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01951

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01950 and MIT1002_01951 overlap by 1 nucleotidesMIT1002_01951 and MIT1002_01952 are separated by 328 nucleotides MIT1002_01950: MIT1002_01950 - Succinyl-CoA ligase [ADP-forming] subunit beta, at 2,167,028 to 2,168,194 _01950 MIT1002_01951: MIT1002_01951 - Succinyl-CoA ligase [ADP-forming] subunit alpha, at 2,168,194 to 2,169,066 _01951 MIT1002_01952: MIT1002_01952 - TonB-dependent receptor, at 2,169,395 to 2,172,211 _01952 Position (kb) 2168 2169 2170Strain fitness (log2 ratio) -2 -1 0 1 2at 2169.136 kb on - strandat 2169.195 kb on - strandat 2169.292 kb on + strandat 2169.303 kb on + strandat 2169.311 kb on - strandat 2169.311 kb on - strandat 2169.344 kb on + strandat 2169.383 kb on - strandat 2169.426 kb on - strandat 2169.487 kb on + strandat 2169.519 kb on - strandat 2169.553 kb on - strandat 2169.605 kb on + strandat 2169.673 kb on - strandat 2169.753 kb on + strand, within MIT1002_01952at 2169.753 kb on + strand, within MIT1002_01952at 2169.898 kb on + strand, within MIT1002_01952at 2169.964 kb on - strand, within MIT1002_01952at 2169.975 kb on - strand, within MIT1002_01952

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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2,169,136 - -0.7
2,169,195 - -2.4
2,169,292 + -1.3
2,169,303 + +1.3
2,169,311 - +1.1
2,169,311 - +1.1
2,169,344 + +1.2
2,169,383 - -0.4
2,169,426 - -0.1
2,169,487 + +0.4
2,169,519 - +0.5
2,169,553 - +0.4
2,169,605 + +0.6
2,169,673 - +0.7
2,169,753 + MIT1002_01952 0.13 -0.8
2,169,753 + MIT1002_01952 0.13 +0.6
2,169,898 + MIT1002_01952 0.18 +0.7
2,169,964 - MIT1002_01952 0.20 +0.9
2,169,975 - MIT1002_01952 0.21 +2.5

Or see this region's nucleotide sequence