Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01540

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
1,692,998	+				-0.2
1,693,005	+				-2.9
1,693,048	+		MIT1002_01539	0.15	+0.3
1,693,056	-		MIT1002_01539	0.17	-0.8
1,693,056	-		MIT1002_01539	0.17	+0.1
1,693,056	-		MIT1002_01539	0.17	+1.9
1,693,082	-		MIT1002_01539	0.23	+2.7
1,693,098	-		MIT1002_01539	0.27	-0.2
1,693,166	+		MIT1002_01539	0.44	+1.7
1,693,235	-		MIT1002_01539	0.60	+0.4
1,693,303	-		MIT1002_01539	0.77	-1.5
1,693,303	-		MIT1002_01539	0.77	+0.1
1,693,345	+		MIT1002_01539	0.87	-1.2
1,693,378	+				-0.4
1,693,400	+				-0.8
1,693,499	+		MIT1002_01540	0.14	+0.1
1,693,509	+		MIT1002_01540	0.17	+2.1
1,693,517	-		MIT1002_01540	0.19	-1.4
1,693,526	+		MIT1002_01540	0.22	-0.9
1,693,527	-		MIT1002_01540	0.22	-0.0
1,693,534	-		MIT1002_01540	0.24	-0.9
1,693,576	+		MIT1002_01540	0.37	-0.9
1,693,590	+		MIT1002_01540	0.42	-0.1
1,693,598	-		MIT1002_01540	0.44	+1.0
1,693,618	-		MIT1002_01540	0.50	-0.0
1,693,799	+				-1.2
1,693,799	+				-1.2
1,693,799	+				+1.2
1,693,799	+				+0.5
1,693,799	+				+0.0
1,693,799	+				-1.4
1,693,799	+				-0.9
1,693,807	-				-2.6
1,693,807	-				+0.8
1,693,814	-				-0.0
1,693,923	-				+1.5
1,694,070	-				+1.8
1,694,107	-				-0.5
1,694,152	+				+0.0
1,694,152	+				-0.6
1,694,169	-		MIT1002_01541	0.10	-0.6
1,694,260	-		MIT1002_01541	0.14	+1.4
1,694,287	+		MIT1002_01541	0.15	+0.9
1,694,297	+		MIT1002_01541	0.16	+0.7
1,694,308	-		MIT1002_01541	0.16	-0.4
1,694,338	+		MIT1002_01541	0.17	-2.3
1,694,458	-		MIT1002_01541	0.22	-0.1
1,694,622	-		MIT1002_01541	0.29	+0.6
1,694,753	+		MIT1002_01541	0.34	+0.3
1,694,776	+		MIT1002_01541	0.35	-0.6
1,694,776	+		MIT1002_01541	0.35	-0.3
1,694,776	-		MIT1002_01541	0.35	-2.6