Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01359

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
1,502,051	-		MIT1002_01357	0.64	-1.4
1,502,053	+		MIT1002_01357	0.64	+0.8
1,502,072	+		MIT1002_01357	0.68	+0.4
1,502,090	-		MIT1002_01357	0.72	+0.2
1,502,257	+				+0.2
1,502,336	+				-0.1
1,502,336	+				+1.0
1,502,336	+				-2.0
1,502,344	-				-1.9
1,502,397	-		MIT1002_01358	0.13	+0.5
1,502,453	+		MIT1002_01358	0.26	+0.1
1,502,593	+		MIT1002_01358	0.60	+0.3
1,502,615	-		MIT1002_01358	0.65	+0.6
1,502,739	+				+1.9
1,502,755	+				-0.2
1,502,761	+				+2.4
1,502,784	-				-0.9
1,502,785	+				-0.5
1,502,803	+				-0.0
1,502,821	-				+0.6
1,502,943	+				+0.4
1,502,951	-				+0.4
1,503,062	-				-1.2
1,503,095	-				-1.1
1,503,095	-				+0.8
1,503,358	+		MIT1002_01359	0.16	-1.2
1,503,430	-		MIT1002_01359	0.19	+2.0
1,503,496	-		MIT1002_01359	0.21	-0.8
1,503,557	-		MIT1002_01359	0.23	+0.6
1,503,595	-		MIT1002_01359	0.24	+0.1
1,503,634	-		MIT1002_01359	0.25	+0.7
1,503,689	-		MIT1002_01359	0.27	-1.8
1,503,689	-		MIT1002_01359	0.27	+1.1
1,503,691	+		MIT1002_01359	0.27	+0.8
1,503,691	+		MIT1002_01359	0.27	+0.1
1,503,698	+		MIT1002_01359	0.27	-0.4
1,503,699	-		MIT1002_01359	0.27	-0.4
1,503,774	-		MIT1002_01359	0.30	+0.0
1,503,829	+		MIT1002_01359	0.32	+0.0
1,503,859	+		MIT1002_01359	0.33	+0.2
1,503,887	+		MIT1002_01359	0.34	-2.7
1,503,934	+		MIT1002_01359	0.35	-1.2
1,504,096	-		MIT1002_01359	0.40	-1.4
1,504,098	-		MIT1002_01359	0.41	-0.5
1,504,124	+		MIT1002_01359	0.41	-0.4
1,504,132	-		MIT1002_01359	0.42	-1.0
1,504,134	+		MIT1002_01359	0.42	-0.3
1,504,212	-		MIT1002_01359	0.44	-0.6
1,504,349	+		MIT1002_01359	0.49	-1.0
1,504,374	+		MIT1002_01359	0.50	-1.0
1,504,554	+		MIT1002_01359	0.56	+1.0
1,504,554	+		MIT1002_01359	0.56	-0.9
1,504,606	-		MIT1002_01359	0.57	+0.3
1,504,622	+		MIT1002_01359	0.58	+1.2
1,504,678	-		MIT1002_01359	0.60	+2.9
1,504,770	-		MIT1002_01359	0.63	-0.2
1,504,784	-		MIT1002_01359	0.63	-1.1
1,504,784	-		MIT1002_01359	0.63	-0.6
1,504,820	+		MIT1002_01359	0.64	-0.8
1,504,864	-		MIT1002_01359	0.66	-0.6
1,504,924	+		MIT1002_01359	0.68	-0.7
1,504,930	-		MIT1002_01359	0.68	-0.8
1,505,042	-		MIT1002_01359	0.72	-0.6
1,505,202	-		MIT1002_01359	0.77	-1.0
1,505,313	+		MIT1002_01359	0.80	+2.7
1,505,321	-		MIT1002_01359	0.81	-0.9
1,505,321	-		MIT1002_01359	0.81	-3.3
1,505,321	-		MIT1002_01359	0.81	+1.6
1,505,335	+		MIT1002_01359	0.81	+0.4
1,505,335	+		MIT1002_01359	0.81	-0.5
1,505,335	+		MIT1002_01359	0.81	-1.0
1,505,404	-		MIT1002_01359	0.83	-0.1
1,505,462	-		MIT1002_01359	0.85	-0.1
1,505,523	+		MIT1002_01359	0.87	-0.1
1,505,523	-		MIT1002_01359	0.87	+0.3
1,505,554	-		MIT1002_01359	0.88	-0.0
1,505,601	-		MIT1002_01359	0.90	+0.0
1,505,607	+				+0.0
1,505,687	-				-0.3
1,505,789	+				+0.3
1,505,806	-				-1.8
1,505,812	+				-0.6
1,505,892	-				-1.2
1,505,960	-				-0.1
1,505,984	+				+1.5
1,505,984	+				+1.1
1,506,002	-				-0.6
1,506,005	+				+0.1
1,506,014	-				-1.0
1,506,133	+		MIT1002_01360	0.20	-0.6
1,506,146	+		MIT1002_01360	0.22	+0.3
1,506,154	-		MIT1002_01360	0.22	+0.3
1,506,174	-		MIT1002_01360	0.24	-2.8
1,506,187	-		MIT1002_01360	0.25	-2.6
1,506,242	-		MIT1002_01360	0.30	+1.0
1,506,281	+		MIT1002_01360	0.34	-2.2
1,506,288	+		MIT1002_01360	0.35	-0.0
1,506,298	-		MIT1002_01360	0.36	+0.6
1,506,298	-		MIT1002_01360	0.36	+0.0
1,506,301	-		MIT1002_01360	0.36	+0.4
1,506,319	+		MIT1002_01360	0.38	-1.0
1,506,345	+		MIT1002_01360	0.40	-0.2
1,506,345	+		MIT1002_01360	0.40	+0.1
1,506,515	+		MIT1002_01360	0.56	+0.8
1,506,526	-		MIT1002_01360	0.57	+0.2
1,506,560	-		MIT1002_01360	0.60	+1.6
1,506,596	-		MIT1002_01360	0.63	-0.0
1,506,597	+		MIT1002_01360	0.63	+0.3
1,506,597	+		MIT1002_01360	0.63	+1.3
1,506,597	+		MIT1002_01360	0.63	-0.2
1,506,605	-		MIT1002_01360	0.64	+0.8
1,506,608	-		MIT1002_01360	0.64	+0.5
1,506,667	-		MIT1002_01360	0.70	-1.4
1,506,678	-		MIT1002_01360	0.71	-0.3
1,506,758	+		MIT1002_01360	0.78	-0.6
1,506,775	-		MIT1002_01360	0.79	-0.6
1,506,880	+		MIT1002_01360	0.89	-0.7