Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01258

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01256 and MIT1002_01257 overlap by 1 nucleotidesMIT1002_01257 and MIT1002_01258 are separated by 193 nucleotidesMIT1002_01258 and MIT1002_01259 are separated by 27 nucleotides MIT1002_01256: MIT1002_01256 - Nitrogen fixation protein rnfB, at 1,383,760 to 1,384,341 _01256 MIT1002_01257: MIT1002_01257 - Electron transport complex protein RnfA, at 1,384,341 to 1,384,922 _01257 MIT1002_01258: MIT1002_01258 - tRNA-Asn, at 1,385,116 to 1,385,192 _01258 MIT1002_01259: MIT1002_01259 - tRNA-Asn, at 1,385,220 to 1,385,296 _01259 Position (kb) 1385 1386Strain fitness (log2 ratio) -2 -1 0 1at 1384.993 kb on + strandat 1385.049 kb on + strandat 1385.175 kb on - strand, within MIT1002_01258at 1385.737 kb on + strandat 1385.774 kb on + strandat 1385.782 kb on + strandat 1385.782 kb on - strandat 1385.792 kb on - strandat 1386.191 kb on + strandat 1386.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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1,384,993 + -0.0
1,385,049 + +1.5
1,385,175 - MIT1002_01258 0.77 -2.0
1,385,737 + +0.7
1,385,774 + +0.2
1,385,782 + +0.5
1,385,782 - +0.4
1,385,792 - +0.2
1,386,191 + +0.1
1,386,191 + +0.1

Or see this region's nucleotide sequence