Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01122

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01120 and MIT1002_01121 are separated by 158 nucleotidesMIT1002_01121 and MIT1002_01122 are separated by 11 nucleotidesMIT1002_01122 and MIT1002_01123 are separated by 253 nucleotides MIT1002_01120: MIT1002_01120 - Morphology and auto-aggregation control protein, at 1,229,916 to 1,230,884 _01120 MIT1002_01121: MIT1002_01121 - Carbonic anhydrase 1, at 1,231,043 to 1,231,696 _01121 MIT1002_01122: MIT1002_01122 - Bicarbonate transporter BicA, at 1,231,708 to 1,233,345 _01122 MIT1002_01123: MIT1002_01123 - TonB-dependent siderophore receptor, at 1,233,599 to 1,236,022 _01123 Position (kb) 1231 1232 1233 1234Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1230.725 kb on + strand, within MIT1002_01120at 1230.733 kb on - strand, within MIT1002_01120at 1230.751 kb on + strand, within MIT1002_01120at 1230.756 kb on + strand, within MIT1002_01120at 1230.759 kb on - strand, within MIT1002_01120at 1230.759 kb on - strand, within MIT1002_01120at 1230.759 kb on - strand, within MIT1002_01120at 1230.759 kb on - strand, within MIT1002_01120at 1230.765 kb on + strand, within MIT1002_01120at 1230.765 kb on + strand, within MIT1002_01120at 1230.773 kb on - strand, within MIT1002_01120at 1230.773 kb on - strand, within MIT1002_01120at 1230.773 kb on - strand, within MIT1002_01120at 1230.773 kb on - strand, within MIT1002_01120at 1230.773 kb on - strand, within MIT1002_01120at 1230.778 kb on - strand, within MIT1002_01120at 1230.900 kb on + strandat 1230.900 kb on + strandat 1230.911 kb on + strandat 1230.916 kb on + strandat 1231.044 kb on - strandat 1231.127 kb on + strand, within MIT1002_01121at 1231.134 kb on + strand, within MIT1002_01121at 1231.142 kb on - strand, within MIT1002_01121at 1231.221 kb on + strand, within MIT1002_01121at 1231.229 kb on - strand, within MIT1002_01121at 1231.229 kb on - strand, within MIT1002_01121at 1231.244 kb on + strand, within MIT1002_01121at 1231.245 kb on - strand, within MIT1002_01121at 1231.245 kb on - strand, within MIT1002_01121at 1231.288 kb on + strand, within MIT1002_01121at 1231.296 kb on + strand, within MIT1002_01121at 1231.376 kb on - strand, within MIT1002_01121at 1231.377 kb on + strand, within MIT1002_01121at 1231.412 kb on + strand, within MIT1002_01121at 1231.415 kb on - strand, within MIT1002_01121at 1231.458 kb on + strand, within MIT1002_01121at 1231.466 kb on - strand, within MIT1002_01121at 1231.517 kb on + strand, within MIT1002_01121at 1231.533 kb on - strand, within MIT1002_01121at 1231.565 kb on + strand, within MIT1002_01121at 1231.569 kb on + strand, within MIT1002_01121at 1231.570 kb on + strand, within MIT1002_01121at 1231.578 kb on - strand, within MIT1002_01121at 1231.589 kb on + strand, within MIT1002_01121at 1231.607 kb on + strand, within MIT1002_01121at 1231.615 kb on - strand, within MIT1002_01121at 1231.706 kb on - strandat 1231.811 kb on + strandat 1231.818 kb on - strandat 1231.828 kb on + strandat 1231.836 kb on - strandat 1231.838 kb on + strandat 1231.847 kb on - strandat 1231.964 kb on - strand, within MIT1002_01122at 1231.971 kb on - strand, within MIT1002_01122at 1232.016 kb on + strand, within MIT1002_01122at 1232.046 kb on + strand, within MIT1002_01122at 1232.130 kb on - strand, within MIT1002_01122at 1232.132 kb on - strand, within MIT1002_01122at 1232.163 kb on + strand, within MIT1002_01122at 1232.211 kb on + strand, within MIT1002_01122at 1232.212 kb on - strand, within MIT1002_01122at 1232.259 kb on + strand, within MIT1002_01122at 1232.309 kb on - strand, within MIT1002_01122at 1232.346 kb on + strand, within MIT1002_01122at 1232.355 kb on - strand, within MIT1002_01122at 1232.356 kb on + strand, within MIT1002_01122at 1232.357 kb on + strand, within MIT1002_01122at 1232.357 kb on + strand, within MIT1002_01122at 1232.357 kb on + strand, within MIT1002_01122at 1232.365 kb on - strand, within MIT1002_01122at 1232.365 kb on - strand, within MIT1002_01122at 1232.382 kb on + strand, within MIT1002_01122at 1232.390 kb on - strand, within MIT1002_01122at 1232.433 kb on - strand, within MIT1002_01122at 1232.435 kb on - strand, within MIT1002_01122at 1232.439 kb on + strand, within MIT1002_01122at 1232.476 kb on + strand, within MIT1002_01122at 1232.503 kb on + strand, within MIT1002_01122at 1232.511 kb on - strand, within MIT1002_01122at 1232.568 kb on - strand, within MIT1002_01122at 1232.568 kb on - strand, within MIT1002_01122at 1232.610 kb on + strand, within MIT1002_01122at 1232.626 kb on + strand, within MIT1002_01122at 1232.644 kb on - strand, within MIT1002_01122at 1232.663 kb on + strand, within MIT1002_01122at 1232.671 kb on - strand, within MIT1002_01122at 1232.757 kb on - strand, within MIT1002_01122at 1232.866 kb on + strand, within MIT1002_01122at 1232.871 kb on + strand, within MIT1002_01122at 1232.947 kb on - strand, within MIT1002_01122at 1232.974 kb on - strand, within MIT1002_01122at 1232.988 kb on - strand, within MIT1002_01122at 1233.011 kb on + strand, within MIT1002_01122at 1233.019 kb on - strand, within MIT1002_01122at 1233.143 kb on + strand, within MIT1002_01122at 1233.171 kb on - strand, within MIT1002_01122at 1233.182 kb on - strandat 1233.210 kb on + strandat 1233.257 kb on - strandat 1233.294 kb on + strandat 1233.361 kb on + strandat 1233.375 kb on + strandat 1233.385 kb on + strandat 1233.393 kb on - strandat 1233.447 kb on + strandat 1233.447 kb on + strandat 1233.447 kb on + strandat 1233.447 kb on + strandat 1233.455 kb on - strandat 1233.455 kb on - strandat 1233.455 kb on - strandat 1233.455 kb on - strandat 1233.554 kb on + strandat 1233.562 kb on - strandat 1233.666 kb on - strandat 1233.703 kb on - strandat 1233.733 kb on + strandat 1233.788 kb on + strandat 1233.796 kb on - strandat 1233.798 kb on - strandat 1233.812 kb on + strandat 1233.820 kb on - strandat 1233.820 kb on - strandat 1233.820 kb on - strandat 1233.870 kb on + strand, within MIT1002_01123at 1233.870 kb on + strand, within MIT1002_01123at 1233.933 kb on + strand, within MIT1002_01123at 1233.935 kb on + strand, within MIT1002_01123at 1233.960 kb on - strand, within MIT1002_01123at 1234.061 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.095 kb on + strand, within MIT1002_01123at 1234.095 kb on + strand, within MIT1002_01123at 1234.095 kb on + strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.112 kb on + strand, within MIT1002_01123at 1234.174 kb on + strand, within MIT1002_01123at 1234.236 kb on + strand, within MIT1002_01123at 1234.236 kb on + strand, within MIT1002_01123at 1234.244 kb on - strand, within MIT1002_01123at 1234.255 kb on - strand, within MIT1002_01123at 1234.264 kb on + strand, within MIT1002_01123at 1234.325 kb on + strand, within MIT1002_01123at 1234.326 kb on - strand, within MIT1002_01123at 1234.333 kb on + strand, within MIT1002_01123

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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1,230,725 + MIT1002_01120 0.83 -0.9
1,230,733 - MIT1002_01120 0.84 -0.3
1,230,751 + MIT1002_01120 0.86 -0.9
1,230,756 + MIT1002_01120 0.87 -2.0
1,230,759 - MIT1002_01120 0.87 -0.8
1,230,759 - MIT1002_01120 0.87 -0.6
1,230,759 - MIT1002_01120 0.87 -1.0
1,230,759 - MIT1002_01120 0.87 -0.3
1,230,765 + MIT1002_01120 0.88 -2.1
1,230,765 + MIT1002_01120 0.88 +1.2
1,230,773 - MIT1002_01120 0.88 -1.6
1,230,773 - MIT1002_01120 0.88 -2.2
1,230,773 - MIT1002_01120 0.88 -0.5
1,230,773 - MIT1002_01120 0.88 +0.2
1,230,773 - MIT1002_01120 0.88 -0.9
1,230,778 - MIT1002_01120 0.89 -0.8
1,230,900 + +0.2
1,230,900 + -0.5
1,230,911 + -0.7
1,230,916 + +0.3
1,231,044 - -2.4
1,231,127 + MIT1002_01121 0.13 -1.2
1,231,134 + MIT1002_01121 0.14 -2.4
1,231,142 - MIT1002_01121 0.15 -3.9
1,231,221 + MIT1002_01121 0.27 +1.1
1,231,229 - MIT1002_01121 0.28 -3.0
1,231,229 - MIT1002_01121 0.28 -0.3
1,231,244 + MIT1002_01121 0.31 +0.6
1,231,245 - MIT1002_01121 0.31 -2.1
1,231,245 - MIT1002_01121 0.31 -1.3
1,231,288 + MIT1002_01121 0.37 -0.3
1,231,296 + MIT1002_01121 0.39 -3.4
1,231,376 - MIT1002_01121 0.51 -4.1
1,231,377 + MIT1002_01121 0.51 -0.1
1,231,412 + MIT1002_01121 0.56 -1.4
1,231,415 - MIT1002_01121 0.57 -2.7
1,231,458 + MIT1002_01121 0.63 -1.8
1,231,466 - MIT1002_01121 0.65 -2.8
1,231,517 + MIT1002_01121 0.72 -1.2
1,231,533 - MIT1002_01121 0.75 -1.1
1,231,565 + MIT1002_01121 0.80 -1.5
1,231,569 + MIT1002_01121 0.80 -1.3
1,231,570 + MIT1002_01121 0.81 -1.1
1,231,578 - MIT1002_01121 0.82 -3.4
1,231,589 + MIT1002_01121 0.83 -0.1
1,231,607 + MIT1002_01121 0.86 -1.3
1,231,615 - MIT1002_01121 0.87 -1.9
1,231,706 - -3.4
1,231,811 + -3.7
1,231,818 - -1.6
1,231,828 + -1.4
1,231,836 - -5.0
1,231,838 + -3.0
1,231,847 - -3.6
1,231,964 - MIT1002_01122 0.16 -3.4
1,231,971 - MIT1002_01122 0.16 -1.8
1,232,016 + MIT1002_01122 0.19 -0.9
1,232,046 + MIT1002_01122 0.21 -2.8
1,232,130 - MIT1002_01122 0.26 -3.5
1,232,132 - MIT1002_01122 0.26 -1.1
1,232,163 + MIT1002_01122 0.28 -3.6
1,232,211 + MIT1002_01122 0.31 -2.1
1,232,212 - MIT1002_01122 0.31 +0.3
1,232,259 + MIT1002_01122 0.34 -1.9
1,232,309 - MIT1002_01122 0.37 -2.4
1,232,346 + MIT1002_01122 0.39 -2.4
1,232,355 - MIT1002_01122 0.39 -2.3
1,232,356 + MIT1002_01122 0.40 -3.5
1,232,357 + MIT1002_01122 0.40 -3.0
1,232,357 + MIT1002_01122 0.40 -2.1
1,232,357 + MIT1002_01122 0.40 -2.9
1,232,365 - MIT1002_01122 0.40 -1.5
1,232,365 - MIT1002_01122 0.40 -0.7
1,232,382 + MIT1002_01122 0.41 -0.8
1,232,390 - MIT1002_01122 0.42 -3.6
1,232,433 - MIT1002_01122 0.44 -0.5
1,232,435 - MIT1002_01122 0.44 -2.6
1,232,439 + MIT1002_01122 0.45 -4.1
1,232,476 + MIT1002_01122 0.47 +0.5
1,232,503 + MIT1002_01122 0.49 -4.0
1,232,511 - MIT1002_01122 0.49 -2.5
1,232,568 - MIT1002_01122 0.53 -4.5
1,232,568 - MIT1002_01122 0.53 -3.6
1,232,610 + MIT1002_01122 0.55 -3.3
1,232,626 + MIT1002_01122 0.56 -2.8
1,232,644 - MIT1002_01122 0.57 -2.1
1,232,663 + MIT1002_01122 0.58 -1.3
1,232,671 - MIT1002_01122 0.59 -2.6
1,232,757 - MIT1002_01122 0.64 -5.2
1,232,866 + MIT1002_01122 0.71 -4.9
1,232,871 + MIT1002_01122 0.71 -2.5
1,232,947 - MIT1002_01122 0.76 -4.2
1,232,974 - MIT1002_01122 0.77 -2.2
1,232,988 - MIT1002_01122 0.78 -0.9
1,233,011 + MIT1002_01122 0.80 -2.2
1,233,019 - MIT1002_01122 0.80 -2.6
1,233,143 + MIT1002_01122 0.88 -1.1
1,233,171 - MIT1002_01122 0.89 -4.4
1,233,182 - +0.5
1,233,210 + -3.6
1,233,257 - -4.4
1,233,294 + -0.7
1,233,361 + -0.1
1,233,375 + -1.1
1,233,385 + -0.8
1,233,393 - +0.2
1,233,447 + -0.1
1,233,447 + -1.1
1,233,447 + +0.6
1,233,447 + +0.2
1,233,455 - +0.5
1,233,455 - -3.0
1,233,455 - +0.8
1,233,455 - +0.9
1,233,554 + -1.0
1,233,562 - -0.5
1,233,666 - -0.6
1,233,703 - +1.3
1,233,733 + +0.1
1,233,788 + -0.0
1,233,796 - -0.3
1,233,798 - -1.5
1,233,812 + -0.8
1,233,820 - +0.9
1,233,820 - +0.5
1,233,820 - +1.3
1,233,870 + MIT1002_01123 0.11 -1.2
1,233,870 + MIT1002_01123 0.11 +0.8
1,233,933 + MIT1002_01123 0.14 +0.5
1,233,935 + MIT1002_01123 0.14 -0.7
1,233,960 - MIT1002_01123 0.15 -0.1
1,234,061 + MIT1002_01123 0.19 +2.0
1,234,067 + MIT1002_01123 0.19 +0.8
1,234,067 + MIT1002_01123 0.19 +0.8
1,234,067 + MIT1002_01123 0.19 -1.3
1,234,067 + MIT1002_01123 0.19 +0.5
1,234,095 + MIT1002_01123 0.20 -0.5
1,234,095 + MIT1002_01123 0.20 -2.6
1,234,095 + MIT1002_01123 0.20 +0.3
1,234,103 - MIT1002_01123 0.21 +0.8
1,234,103 - MIT1002_01123 0.21 +0.5
1,234,103 - MIT1002_01123 0.21 +0.4
1,234,103 - MIT1002_01123 0.21 +1.0
1,234,103 - MIT1002_01123 0.21 +0.9
1,234,112 + MIT1002_01123 0.21 -0.5
1,234,174 + MIT1002_01123 0.24 -1.0
1,234,236 + MIT1002_01123 0.26 +0.1
1,234,236 + MIT1002_01123 0.26 -0.1
1,234,244 - MIT1002_01123 0.27 +0.1
1,234,255 - MIT1002_01123 0.27 -1.4
1,234,264 + MIT1002_01123 0.27 +0.8
1,234,325 + MIT1002_01123 0.30 +2.1
1,234,326 - MIT1002_01123 0.30 +0.4
1,234,333 + MIT1002_01123 0.30 +1.3

Or see this region's nucleotide sequence