Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00980

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00978 and MIT1002_00979 are separated by 180 nucleotidesMIT1002_00979 and MIT1002_00980 overlap by 4 nucleotidesMIT1002_00980 and MIT1002_00981 are separated by 261 nucleotides MIT1002_00978: MIT1002_00978 - Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase, at 1,084,969 to 1,086,030 _00978 MIT1002_00979: MIT1002_00979 - Putative glycosyltransferase EpsE, at 1,086,211 to 1,087,032 _00979 MIT1002_00980: MIT1002_00980 - rhamnosyltransferase, at 1,087,029 to 1,087,925 _00980 MIT1002_00981: MIT1002_00981 - UTP--glucose-1-phosphate uridylyltransferase, at 1,088,187 to 1,089,080 _00981 Position (kb) 1087 1088Strain fitness (log2 ratio) -1 0 1at 1086.065 kb on + strandat 1087.873 kb on + strandat 1087.973 kb on + strandat 1088.034 kb on - strandat 1088.063 kb on - strandat 1088.081 kb on + strandat 1088.118 kb on - strandat 1088.154 kb on - strandat 1088.156 kb on + strandat 1088.724 kb on + strand, within MIT1002_00981

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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1,086,065 + -0.2
1,087,873 + -0.0
1,087,973 + +0.3
1,088,034 - -0.4
1,088,063 - +0.7
1,088,081 + +0.5
1,088,118 - -0.0
1,088,154 - +1.2
1,088,156 + -0.1
1,088,724 + MIT1002_00981 0.60 -1.4

Or see this region's nucleotide sequence