Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00811 and MIT1002_00812 are separated by 298 nucleotides MIT1002_00812 and MIT1002_00813 are separated by 12 nucleotides MIT1002_00813 and MIT1002_00814 are separated by 437 nucleotides
MIT1002_00811: MIT1002_00811 - hypothetical protein, at 897,023 to 897,895
_00811
MIT1002_00812: MIT1002_00812 - 50S ribosomal protein L13, at 898,194 to 898,622
_00812
MIT1002_00813: MIT1002_00813 - 30S ribosomal protein S9, at 898,635 to 899,027
_00813
MIT1002_00814: MIT1002_00814 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 899,465 to 900,097
_00814
Position (kb) 898
899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 897.706 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.756 kb on + strand, within MIT1002_00811 at 897.783 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.796 kb on - strand, within MIT1002_00811 at 897.834 kb on + strand at 897.836 kb on + strand at 897.840 kb on - strand at 897.842 kb on - strand at 897.850 kb on - strand at 897.855 kb on + strand at 897.856 kb on + strand at 897.871 kb on + strand at 897.950 kb on - strand at 897.951 kb on + strand at 897.951 kb on + strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 898.020 kb on + strand at 898.028 kb on - strand at 898.081 kb on + strand at 899.115 kb on - strand at 899.134 kb on - strand at 899.153 kb on + strand at 899.153 kb on + strand at 899.207 kb on + strand at 899.232 kb on - strand at 899.344 kb on - strand at 899.388 kb on - strand at 899.403 kb on - strand at 899.415 kb on + strand at 899.425 kb on + strand at 899.484 kb on + strand at 899.539 kb on + strand, within MIT1002_00814 at 899.662 kb on - strand, within MIT1002_00814 at 899.684 kb on - strand, within MIT1002_00814 at 899.715 kb on - strand, within MIT1002_00814 at 899.773 kb on - strand, within MIT1002_00814 at 899.791 kb on + strand, within MIT1002_00814 at 899.872 kb on - strand, within MIT1002_00814 at 899.879 kb on + strand, within MIT1002_00814 at 899.887 kb on - strand, within MIT1002_00814 at 899.889 kb on + strand, within MIT1002_00814 at 899.892 kb on + strand, within MIT1002_00814 at 899.986 kb on + strand, within MIT1002_00814
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 897,706 - MIT1002_00811 0.78 -0.9 897,706 - MIT1002_00811 0.78 +1.1 897,739 + MIT1002_00811 0.82 -0.6 897,739 + MIT1002_00811 0.82 -0.2 897,739 + MIT1002_00811 0.82 -2.0 897,739 + MIT1002_00811 0.82 +1.1 897,756 + MIT1002_00811 0.84 +0.2 897,783 + MIT1002_00811 0.87 +0.3 897,788 + MIT1002_00811 0.88 +1.3 897,788 + MIT1002_00811 0.88 -0.1 897,796 - MIT1002_00811 0.89 +0.2 897,834 + +0.9 897,836 + +0.8 897,840 - -0.6 897,842 - +0.4 897,850 - +4.2 897,855 + -0.2 897,856 + -0.3 897,871 + +0.1 897,950 - +0.0 897,951 + -0.1 897,951 + -2.1 897,971 - -2.1 897,971 - -2.2 897,971 - +0.4 897,971 - +0.4 897,971 - -1.9 898,020 + -2.3 898,028 - -0.8 898,081 + +0.9 899,115 - -1.4 899,134 - -0.4 899,153 + -1.2 899,153 + -1.5 899,207 + +0.6 899,232 - +0.0 899,344 - -1.7 899,388 - -3.6 899,403 - -1.4 899,415 + -0.1 899,425 + -0.4 899,484 + -1.4 899,539 + MIT1002_00814 0.12 -1.4 899,662 - MIT1002_00814 0.31 -3.2 899,684 - MIT1002_00814 0.35 -2.1 899,715 - MIT1002_00814 0.39 -0.4 899,773 - MIT1002_00814 0.49 -1.4 899,791 + MIT1002_00814 0.52 -4.0 899,872 - MIT1002_00814 0.64 -1.2 899,879 + MIT1002_00814 0.65 -1.2 899,887 - MIT1002_00814 0.67 -3.1 899,889 + MIT1002_00814 0.67 -0.7 899,892 + MIT1002_00814 0.67 -1.7 899,986 + MIT1002_00814 0.82 -2.2
Or see this region's nucleotide sequence