Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00762 and MIT1002_00763 are separated by 57 nucleotides MIT1002_00763 and MIT1002_00764 overlap by 8 nucleotides
MIT1002_00762: MIT1002_00762 - Anaphase-promoting complex, cyclosome, subunit 3, at 837,140 to 838,498
_00762
MIT1002_00763: MIT1002_00763 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 838,556 to 839,656
_00763
MIT1002_00764: MIT1002_00764 - Signal transduction histidine-protein kinase BarA, at 839,649 to 842,276
_00764
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 837.586 kb on + strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.591 kb on + strand, within MIT1002_00762 at 837.591 kb on + strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.599 kb on - strand, within MIT1002_00762 at 837.599 kb on - strand, within MIT1002_00762 at 837.599 kb on - strand, within MIT1002_00762 at 837.601 kb on + strand, within MIT1002_00762 at 837.647 kb on - strand, within MIT1002_00762 at 837.653 kb on - strand, within MIT1002_00762 at 837.695 kb on - strand, within MIT1002_00762 at 837.770 kb on + strand, within MIT1002_00762 at 837.779 kb on - strand, within MIT1002_00762 at 837.834 kb on + strand, within MIT1002_00762 at 837.849 kb on - strand, within MIT1002_00762 at 837.849 kb on - strand, within MIT1002_00762 at 837.850 kb on - strand, within MIT1002_00762 at 837.856 kb on + strand, within MIT1002_00762 at 837.856 kb on + strand, within MIT1002_00762 at 837.873 kb on + strand, within MIT1002_00762 at 837.897 kb on - strand, within MIT1002_00762 at 837.908 kb on + strand, within MIT1002_00762 at 837.928 kb on - strand, within MIT1002_00762 at 837.979 kb on + strand, within MIT1002_00762 at 838.000 kb on + strand, within MIT1002_00762 at 838.000 kb on + strand, within MIT1002_00762 at 838.000 kb on + strand, within MIT1002_00762 at 838.003 kb on - strand, within MIT1002_00762 at 838.006 kb on - strand, within MIT1002_00762 at 838.008 kb on - strand, within MIT1002_00762 at 838.023 kb on - strand, within MIT1002_00762 at 838.054 kb on - strand, within MIT1002_00762 at 838.126 kb on - strand, within MIT1002_00762 at 838.126 kb on - strand, within MIT1002_00762 at 838.131 kb on - strand, within MIT1002_00762 at 838.150 kb on - strand, within MIT1002_00762 at 838.150 kb on - strand, within MIT1002_00762 at 838.176 kb on + strand, within MIT1002_00762 at 838.184 kb on - strand, within MIT1002_00762 at 838.304 kb on + strand, within MIT1002_00762 at 838.318 kb on + strand, within MIT1002_00762 at 838.358 kb on - strand, within MIT1002_00762 at 838.362 kb on + strand, within MIT1002_00762 at 838.428 kb on + strand at 838.428 kb on + strand at 838.436 kb on - strand at 838.455 kb on - strand at 838.502 kb on - strand at 838.597 kb on - strand at 838.617 kb on + strand at 838.625 kb on - strand at 838.625 kb on - strand at 838.705 kb on + strand, within MIT1002_00763 at 838.705 kb on + strand, within MIT1002_00763 at 838.707 kb on + strand, within MIT1002_00763 at 838.713 kb on - strand, within MIT1002_00763 at 838.713 kb on - strand, within MIT1002_00763 at 838.713 kb on - strand, within MIT1002_00763 at 838.838 kb on + strand, within MIT1002_00763 at 838.883 kb on + strand, within MIT1002_00763 at 838.891 kb on - strand, within MIT1002_00763 at 838.936 kb on + strand, within MIT1002_00763 at 838.958 kb on - strand, within MIT1002_00763 at 838.980 kb on - strand, within MIT1002_00763 at 838.983 kb on + strand, within MIT1002_00763 at 839.056 kb on - strand, within MIT1002_00763 at 839.056 kb on - strand, within MIT1002_00763 at 839.088 kb on + strand, within MIT1002_00763 at 839.096 kb on - strand, within MIT1002_00763 at 839.096 kb on - strand, within MIT1002_00763 at 839.102 kb on - strand, within MIT1002_00763 at 839.159 kb on - strand, within MIT1002_00763 at 839.243 kb on + strand, within MIT1002_00763 at 839.243 kb on - strand, within MIT1002_00763 at 839.251 kb on - strand, within MIT1002_00763 at 839.251 kb on - strand, within MIT1002_00763 at 839.299 kb on + strand, within MIT1002_00763 at 839.299 kb on + strand, within MIT1002_00763 at 839.309 kb on + strand, within MIT1002_00763 at 839.345 kb on - strand, within MIT1002_00763 at 839.379 kb on - strand, within MIT1002_00763 at 839.386 kb on - strand, within MIT1002_00763 at 839.386 kb on - strand, within MIT1002_00763 at 839.386 kb on - strand, within MIT1002_00763 at 839.412 kb on - strand, within MIT1002_00763 at 839.412 kb on - strand, within MIT1002_00763 at 839.423 kb on - strand, within MIT1002_00763 at 839.446 kb on + strand, within MIT1002_00763 at 839.446 kb on + strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.529 kb on - strand, within MIT1002_00763 at 839.546 kb on + strand, within MIT1002_00763 at 839.554 kb on - strand at 839.716 kb on + strand at 839.764 kb on + strand at 839.798 kb on - strand at 839.828 kb on + strand at 839.828 kb on + strand at 839.846 kb on - strand at 839.846 kb on - strand at 839.846 kb on - strand at 839.870 kb on + strand at 839.888 kb on - strand at 839.994 kb on - strand, within MIT1002_00764 at 840.093 kb on + strand, within MIT1002_00764 at 840.176 kb on + strand, within MIT1002_00764 at 840.218 kb on + strand, within MIT1002_00764 at 840.252 kb on - strand, within MIT1002_00764 at 840.273 kb on - strand, within MIT1002_00764 at 840.330 kb on - strand, within MIT1002_00764 at 840.332 kb on + strand, within MIT1002_00764 at 840.426 kb on + strand, within MIT1002_00764 at 840.536 kb on + strand, within MIT1002_00764 at 840.626 kb on - strand, within MIT1002_00764
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 837,586 + MIT1002_00762 0.33 +0.1 837,586 + MIT1002_00762 0.33 +0.5 837,586 + MIT1002_00762 0.33 -0.7 837,586 + MIT1002_00762 0.33 +1.0 837,591 + MIT1002_00762 0.33 -2.1 837,591 + MIT1002_00762 0.33 -2.2 837,594 - MIT1002_00762 0.33 -0.5 837,594 - MIT1002_00762 0.33 -2.9 837,594 - MIT1002_00762 0.33 -0.3 837,594 - MIT1002_00762 0.33 +1.2 837,594 - MIT1002_00762 0.33 -0.9 837,599 - MIT1002_00762 0.34 +0.6 837,599 - MIT1002_00762 0.34 -0.7 837,599 - MIT1002_00762 0.34 -2.1 837,601 + MIT1002_00762 0.34 -1.7 837,647 - MIT1002_00762 0.37 -0.6 837,653 - MIT1002_00762 0.38 -0.0 837,695 - MIT1002_00762 0.41 -2.0 837,770 + MIT1002_00762 0.46 +0.1 837,779 - MIT1002_00762 0.47 -0.6 837,834 + MIT1002_00762 0.51 -1.0 837,849 - MIT1002_00762 0.52 +0.4 837,849 - MIT1002_00762 0.52 -0.8 837,850 - MIT1002_00762 0.52 -1.0 837,856 + MIT1002_00762 0.53 -0.7 837,856 + MIT1002_00762 0.53 -1.1 837,873 + MIT1002_00762 0.54 -0.3 837,897 - MIT1002_00762 0.56 -0.4 837,908 + MIT1002_00762 0.57 -0.0 837,928 - MIT1002_00762 0.58 -0.2 837,979 + MIT1002_00762 0.62 -1.1 838,000 + MIT1002_00762 0.63 -2.7 838,000 + MIT1002_00762 0.63 -0.3 838,000 + MIT1002_00762 0.63 -0.1 838,003 - MIT1002_00762 0.64 -0.4 838,006 - MIT1002_00762 0.64 -1.2 838,008 - MIT1002_00762 0.64 -0.7 838,023 - MIT1002_00762 0.65 -2.5 838,054 - MIT1002_00762 0.67 +0.6 838,126 - MIT1002_00762 0.73 -1.5 838,126 - MIT1002_00762 0.73 -1.2 838,131 - MIT1002_00762 0.73 -0.7 838,150 - MIT1002_00762 0.74 -1.1 838,150 - MIT1002_00762 0.74 -0.8 838,176 + MIT1002_00762 0.76 +0.3 838,184 - MIT1002_00762 0.77 +2.0 838,304 + MIT1002_00762 0.86 +0.2 838,318 + MIT1002_00762 0.87 +0.1 838,358 - MIT1002_00762 0.90 -2.4 838,362 + MIT1002_00762 0.90 -1.1 838,428 + +0.2 838,428 + +0.9 838,436 - +3.4 838,455 - +0.6 838,502 - -0.7 838,597 - -2.0 838,617 + +1.3 838,625 - +1.8 838,625 - +0.2 838,705 + MIT1002_00763 0.14 +0.1 838,705 + MIT1002_00763 0.14 -0.2 838,707 + MIT1002_00763 0.14 +1.7 838,713 - MIT1002_00763 0.14 +0.1 838,713 - MIT1002_00763 0.14 +1.2 838,713 - MIT1002_00763 0.14 +0.1 838,838 + MIT1002_00763 0.26 +0.2 838,883 + MIT1002_00763 0.30 +0.4 838,891 - MIT1002_00763 0.30 +0.4 838,936 + MIT1002_00763 0.35 -1.1 838,958 - MIT1002_00763 0.37 +1.0 838,980 - MIT1002_00763 0.39 -0.1 838,983 + MIT1002_00763 0.39 +0.4 839,056 - MIT1002_00763 0.45 +0.7 839,056 - MIT1002_00763 0.45 +0.8 839,088 + MIT1002_00763 0.48 +0.5 839,096 - MIT1002_00763 0.49 +0.2 839,096 - MIT1002_00763 0.49 +2.6 839,102 - MIT1002_00763 0.50 +0.4 839,159 - MIT1002_00763 0.55 +0.8 839,243 + MIT1002_00763 0.62 -0.7 839,243 - MIT1002_00763 0.62 -0.9 839,251 - MIT1002_00763 0.63 +0.5 839,251 - MIT1002_00763 0.63 +0.4 839,299 + MIT1002_00763 0.67 +0.1 839,299 + MIT1002_00763 0.67 +0.4 839,309 + MIT1002_00763 0.68 +0.0 839,345 - MIT1002_00763 0.72 -1.5 839,379 - MIT1002_00763 0.75 +0.4 839,386 - MIT1002_00763 0.75 +0.9 839,386 - MIT1002_00763 0.75 -0.6 839,386 - MIT1002_00763 0.75 -0.6 839,412 - MIT1002_00763 0.78 -0.2 839,412 - MIT1002_00763 0.78 +0.3 839,423 - MIT1002_00763 0.79 +0.4 839,446 + MIT1002_00763 0.81 -1.1 839,446 + MIT1002_00763 0.81 +1.5 839,454 - MIT1002_00763 0.82 +0.1 839,454 - MIT1002_00763 0.82 +0.1 839,454 - MIT1002_00763 0.82 +1.1 839,454 - MIT1002_00763 0.82 -0.1 839,454 - MIT1002_00763 0.82 +0.1 839,529 - MIT1002_00763 0.88 -0.0 839,546 + MIT1002_00763 0.90 +1.1 839,554 - -1.3 839,716 + -0.2 839,764 + -0.4 839,798 - +1.8 839,828 + -0.2 839,828 + +0.4 839,846 - +0.9 839,846 - -3.3 839,846 - -0.1 839,870 + -1.3 839,888 - -2.4 839,994 - MIT1002_00764 0.13 +0.4 840,093 + MIT1002_00764 0.17 -0.8 840,176 + MIT1002_00764 0.20 -1.3 840,218 + MIT1002_00764 0.22 -0.1 840,252 - MIT1002_00764 0.23 -1.2 840,273 - MIT1002_00764 0.24 -1.1 840,330 - MIT1002_00764 0.26 +0.7 840,332 + MIT1002_00764 0.26 +2.2 840,426 + MIT1002_00764 0.30 +0.1 840,536 + MIT1002_00764 0.34 +0.2 840,626 - MIT1002_00764 0.37 +0.7
Or see this region's nucleotide sequence