Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00747 and MIT1002_00748 are separated by 186 nucleotides MIT1002_00748 and MIT1002_00749 are separated by 217 nucleotides
MIT1002_00747: MIT1002_00747 - Inner membrane protein YdcO, at 818,965 to 820,155
_00747
MIT1002_00748: MIT1002_00748 - DNA-binding transcriptional repressor PuuR, at 820,342 to 820,905
_00748
MIT1002_00749: MIT1002_00749 - Recombination-associated protein RdgC, at 821,123 to 822,034
_00749
Position (kb) 820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 819.367 kb on + strand, within MIT1002_00747 at 819.370 kb on - strand, within MIT1002_00747 at 819.375 kb on - strand, within MIT1002_00747 at 819.375 kb on - strand, within MIT1002_00747 at 819.437 kb on + strand, within MIT1002_00747 at 819.498 kb on + strand, within MIT1002_00747 at 819.506 kb on - strand, within MIT1002_00747 at 819.510 kb on + strand, within MIT1002_00747 at 819.544 kb on - strand, within MIT1002_00747 at 819.544 kb on - strand, within MIT1002_00747 at 819.546 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.569 kb on + strand, within MIT1002_00747 at 819.610 kb on - strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.659 kb on - strand, within MIT1002_00747 at 819.659 kb on - strand, within MIT1002_00747 at 819.751 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.832 kb on + strand, within MIT1002_00747 at 819.832 kb on + strand, within MIT1002_00747 at 819.833 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.845 kb on - strand, within MIT1002_00747 at 819.893 kb on + strand, within MIT1002_00747 at 819.935 kb on + strand, within MIT1002_00747 at 819.936 kb on + strand, within MIT1002_00747 at 819.936 kb on + strand, within MIT1002_00747 at 819.944 kb on - strand, within MIT1002_00747 at 819.980 kb on - strand, within MIT1002_00747 at 819.982 kb on - strand, within MIT1002_00747 at 819.996 kb on + strand, within MIT1002_00747 at 819.996 kb on + strand, within MIT1002_00747 at 820.093 kb on + strand at 820.106 kb on - strand at 820.124 kb on + strand at 820.127 kb on - strand at 820.129 kb on + strand at 820.339 kb on - strand at 820.382 kb on + strand at 820.382 kb on + strand at 820.387 kb on + strand at 820.390 kb on - strand at 820.421 kb on - strand, within MIT1002_00748 at 820.423 kb on - strand, within MIT1002_00748 at 820.446 kb on + strand, within MIT1002_00748 at 820.446 kb on + strand, within MIT1002_00748 at 820.454 kb on - strand, within MIT1002_00748 at 820.458 kb on + strand, within MIT1002_00748 at 820.458 kb on + strand, within MIT1002_00748 at 820.466 kb on - strand, within MIT1002_00748 at 820.502 kb on - strand, within MIT1002_00748 at 820.587 kb on + strand, within MIT1002_00748 at 820.627 kb on - strand, within MIT1002_00748 at 820.718 kb on - strand, within MIT1002_00748 at 820.727 kb on + strand, within MIT1002_00748 at 820.813 kb on + strand, within MIT1002_00748 at 820.829 kb on + strand, within MIT1002_00748 at 820.837 kb on - strand, within MIT1002_00748 at 820.839 kb on + strand, within MIT1002_00748 at 820.839 kb on + strand, within MIT1002_00748 at 820.842 kb on - strand, within MIT1002_00748 at 820.847 kb on - strand, within MIT1002_00748 at 820.943 kb on + strand at 820.987 kb on + strand at 820.995 kb on - strand at 820.995 kb on - strand at 821.049 kb on + strand at 821.057 kb on - strand at 821.084 kb on - strand at 821.084 kb on - strand at 821.084 kb on - strand at 821.171 kb on - strand at 821.191 kb on + strand at 821.212 kb on - strand at 821.416 kb on + strand, within MIT1002_00749 at 821.416 kb on + strand, within MIT1002_00749 at 821.424 kb on - strand, within MIT1002_00749 at 821.424 kb on - strand, within MIT1002_00749 at 821.424 kb on - strand, within MIT1002_00749 at 821.457 kb on - strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.475 kb on - strand, within MIT1002_00749 at 821.475 kb on - strand, within MIT1002_00749 at 821.475 kb on - strand, within MIT1002_00749 at 821.477 kb on + strand, within MIT1002_00749 at 821.491 kb on + strand, within MIT1002_00749 at 821.499 kb on - strand, within MIT1002_00749 at 821.499 kb on - strand, within MIT1002_00749 at 821.593 kb on - strand, within MIT1002_00749 at 821.612 kb on + strand, within MIT1002_00749 at 821.663 kb on - strand, within MIT1002_00749 at 821.790 kb on - strand, within MIT1002_00749 at 821.794 kb on + strand, within MIT1002_00749 at 821.797 kb on - strand, within MIT1002_00749 at 821.825 kb on + strand, within MIT1002_00749 at 821.832 kb on - strand, within MIT1002_00749
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 819,367 + MIT1002_00747 0.34 -2.4 819,370 - MIT1002_00747 0.34 +3.0 819,375 - MIT1002_00747 0.34 -0.2 819,375 - MIT1002_00747 0.34 +1.1 819,437 + MIT1002_00747 0.40 +0.2 819,498 + MIT1002_00747 0.45 +0.2 819,506 - MIT1002_00747 0.45 +0.9 819,510 + MIT1002_00747 0.46 -0.4 819,544 - MIT1002_00747 0.49 +1.6 819,544 - MIT1002_00747 0.49 -0.4 819,546 + MIT1002_00747 0.49 +0.5 819,564 + MIT1002_00747 0.50 +0.3 819,564 + MIT1002_00747 0.50 -0.2 819,564 + MIT1002_00747 0.50 +1.0 819,569 + MIT1002_00747 0.51 +0.8 819,610 - MIT1002_00747 0.54 -0.5 819,651 + MIT1002_00747 0.58 +0.9 819,651 + MIT1002_00747 0.58 +0.3 819,651 + MIT1002_00747 0.58 -0.4 819,651 + MIT1002_00747 0.58 -0.1 819,651 + MIT1002_00747 0.58 -1.3 819,659 - MIT1002_00747 0.58 -0.2 819,659 - MIT1002_00747 0.58 -1.5 819,751 + MIT1002_00747 0.66 -0.7 819,825 + MIT1002_00747 0.72 +0.8 819,825 + MIT1002_00747 0.72 +0.7 819,825 + MIT1002_00747 0.72 +0.0 819,832 + MIT1002_00747 0.73 +0.3 819,832 + MIT1002_00747 0.73 +0.2 819,833 - MIT1002_00747 0.73 +0.5 819,840 - MIT1002_00747 0.73 -1.0 819,840 - MIT1002_00747 0.73 +1.0 819,840 - MIT1002_00747 0.73 -1.3 819,840 - MIT1002_00747 0.73 +0.2 819,845 - MIT1002_00747 0.74 -0.5 819,893 + MIT1002_00747 0.78 -0.2 819,935 + MIT1002_00747 0.81 +0.5 819,936 + MIT1002_00747 0.82 -0.4 819,936 + MIT1002_00747 0.82 +0.2 819,944 - MIT1002_00747 0.82 -2.2 819,980 - MIT1002_00747 0.85 -0.9 819,982 - MIT1002_00747 0.85 -0.5 819,996 + MIT1002_00747 0.87 +0.3 819,996 + MIT1002_00747 0.87 -1.1 820,093 + +1.7 820,106 - +0.3 820,124 + -1.3 820,127 - +0.2 820,129 + +1.3 820,339 - -0.2 820,382 + +0.3 820,382 + +0.4 820,387 + +0.2 820,390 - +0.6 820,421 - MIT1002_00748 0.14 -0.8 820,423 - MIT1002_00748 0.14 -1.7 820,446 + MIT1002_00748 0.18 +0.1 820,446 + MIT1002_00748 0.18 +0.2 820,454 - MIT1002_00748 0.20 +0.4 820,458 + MIT1002_00748 0.21 -3.2 820,458 + MIT1002_00748 0.21 -0.7 820,466 - MIT1002_00748 0.22 -1.7 820,502 - MIT1002_00748 0.28 -1.1 820,587 + MIT1002_00748 0.43 -0.3 820,627 - MIT1002_00748 0.51 -0.7 820,718 - MIT1002_00748 0.67 +0.1 820,727 + MIT1002_00748 0.68 -1.9 820,813 + MIT1002_00748 0.84 +0.6 820,829 + MIT1002_00748 0.86 -0.7 820,837 - MIT1002_00748 0.88 +1.3 820,839 + MIT1002_00748 0.88 -1.0 820,839 + MIT1002_00748 0.88 +0.3 820,842 - MIT1002_00748 0.89 +2.5 820,847 - MIT1002_00748 0.90 -0.5 820,943 + +0.6 820,987 + +1.0 820,995 - -0.6 820,995 - +0.5 821,049 + +2.6 821,057 - -1.8 821,084 - +3.4 821,084 - -2.8 821,084 - +0.7 821,171 - -0.2 821,191 + +0.5 821,212 - +0.3 821,416 + MIT1002_00749 0.32 -0.5 821,416 + MIT1002_00749 0.32 +0.2 821,424 - MIT1002_00749 0.33 +0.1 821,424 - MIT1002_00749 0.33 +2.6 821,424 - MIT1002_00749 0.33 +0.7 821,457 - MIT1002_00749 0.37 +0.5 821,467 + MIT1002_00749 0.38 +0.6 821,467 + MIT1002_00749 0.38 +0.3 821,467 + MIT1002_00749 0.38 +0.1 821,467 + MIT1002_00749 0.38 +0.0 821,475 - MIT1002_00749 0.39 -0.4 821,475 - MIT1002_00749 0.39 -0.1 821,475 - MIT1002_00749 0.39 -0.0 821,477 + MIT1002_00749 0.39 -0.7 821,491 + MIT1002_00749 0.40 +0.6 821,499 - MIT1002_00749 0.41 +0.0 821,499 - MIT1002_00749 0.41 +1.0 821,593 - MIT1002_00749 0.52 -0.5 821,612 + MIT1002_00749 0.54 -0.6 821,663 - MIT1002_00749 0.59 +0.4 821,790 - MIT1002_00749 0.73 +0.9 821,794 + MIT1002_00749 0.74 -0.0 821,797 - MIT1002_00749 0.74 -1.5 821,825 + MIT1002_00749 0.77 -0.7 821,832 - MIT1002_00749 0.78 -0.4
Or see this region's nucleotide sequence